Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03627 ATGGCTGACCAAGAGAACTGCATGCCCCGCCCTCAGCGCGCAGCCAAGAAGAGGGCCGCCGCTGCAATATGCGAAATGCGCAAGAAGAGGGTCGCGTTGGGCGAGCTCACCAACTTGTCCACCGTCGTTTCCCCTCCGGAGAAACCCTCTTCGGAGGTTCACAAGGAGAAACGGAGAAAGGTCGGAAAACCAAAGCCGTCGGTGTCGGCGGCGCCGGAGAAGTTGGATGATCCTCAAACGTGTGGGCCATACGTTTCTGACATTTACGAGTATCTTCGCGGGATGGAGGTGGATCCTAGTAGAAGACCTTTACCTGATTATGTTCAGAAGGTTCAGAGGGATGTTAATGCAAATATGAGGGGTGTTCTGGTGGATTGGTTGGTGGAGGTTGCCGAGGAATACAAGCTTGTTTCAGACACACTTTATTTCTCTGTTTCTTACATCGATAGGTATCTGTCTTTGAATGCTCTATCTAGACAGAAGCTGCAATTACTGGGTGTTTCTTCAATGCTGATTGCTTCAAAATACGAGGAGATCAAGCCACCTGAGGTGGAGGACTTCTGTTACATTACGGACAACACATACTCCAAGGAAGAGGTTGTGGCCATGGAGGCTGATATATTGAAGTCCTTGAAGTTCGAATTGGGTGGTCCTACGGTAAAGACATTTCTAAGGCATGTGTGCTTTATTGATTCTATCCTTGCTCTGTTCAATTCTTGTTTTAATCCATTTGTATTTTTCCTGGCATGTTGGCTCACTCTATGCTTTATTTGTGTTTGCAGAAGATTCTCTAGGGTGGCTCAAGAGAGTGTTGATGCTTTGGATTTGCAATTTGAGTTTCTTACCTACTACTTGGCTGAGCTCAGTTTGTTGGATTATAATTGCGTGAAGTTCTTGCCTTCTTTAGTGGCCGCATCTGTTGCGTTTCTTGCTCGATTTATGCTAAGCCCAAAGACACATCCTTGGAATTCAGCTCTACATCAGCTCACCAGGTATGAACCTCCTGACTTGAAGGAGTGTGTTCTAAACATACATGATTTGTACCTCAGTAGGAGAGGGGGCTCTTTGCAGGCTGTAAGAGAGAAATACAAACAACATAAGTTCAAATGTGTGGCAACAACACCCTCTCCTCCTGAGATACCGCTTTCATTTTTTGAATTTAGAGGGACAGATATTTAG 1179 0.458 MADQENCMPRPQRAAKKRAAAAICEMRKKRVALGELTNLSTVVSPPEKPSSEVHKEKRRKVGKPKPSVSAAPEKLDDPQTCGPYVSDIYEYLRGMEVDPSRRPLPDYVQKVQRDVNANMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRYLSLNALSRQKLQLLGVSSMLIASKYEEIKPPEVEDFCYITDNTYSKEEVVAMEADILKSLKFELGGPTVKTFLRHVCFIDSILALFNSCFNPFVFFLACWLTLCFICVCRRFSRVAQESVDALDLQFEFLTYYLAELSLLDYNCVKFLPSLVAASVAFLARFMLSPKTHPWNSALHQLTRYEPPDLKECVLNIHDLYLSRRGGSLQAVREKYKQHKFKCVATTPSPPEIPLSFFEFRGTDI. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03627 392 MobiDBLite consensus disorder prediction 38 77 - -
Seca8g03627 392 Gene3D - 103 216 - -
Seca8g03627 392 FunFam Cyclin A1 253 373 - -
Seca8g03627 392 Pfam Cyclin, N-terminal domain 87 215 IPR006671 -
Seca8g03627 392 CDD CYCLIN_AtCycA-like_rpt2 255 368 - -
Seca8g03627 392 ProSitePatterns Cyclins signature. 120 151 IPR006671 -
Seca8g03627 392 SMART Cyclin_C_2 218 377 IPR004367 -
Seca8g03627 392 FunFam G2/mitotic-specific cyclin 103 216 - -
Seca8g03627 392 Pfam Cyclin, C-terminal domain 255 376 IPR004367 -
Seca8g03627 392 PANTHER CYCLINS 58 371 IPR039361 -
Seca8g03627 392 SMART cyclin_7 125 209 IPR013763 -
Seca8g03627 392 SMART cyclin_7 261 346 IPR013763 -
Seca8g03627 392 SUPERFAMILY Cyclin-like 260 379 IPR036915 -
Seca8g03627 392 SUPERFAMILY Cyclin-like 76 215 IPR036915 -
Seca8g03627 392 CDD CYCLIN_AtCycA_like_rpt1 77 214 - -
Seca8g03627 392 Gene3D - 87 373 - -
Seca8g03627 392 PIRSF Cyclin_A_B_D_E 2 233 IPR046965 GO:0016538|GO:0044772
Seca8g03627 392 PIRSF Cyclin_A_B_D_E 231 382 IPR046965 GO:0016538|GO:0044772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03627 Seca-Chr8 104182709 104185575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03627 1 386 Core Cell Cycle Gene Families AT5G43080 57.107 5.69e-147 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03627 K06627 - gmx:100791691 531.561