Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03593 ATGAGTTGCAACGGCTGTCGAGTGCTCCGAAGAGGGTGCAATGAGACATGCGCTTTGAGGTCATGCCTGCAGTGGATCGAGTCCCCTGAATCACAAAAAACGCCACTCTCTTCCTCGCTAAGTTCTTCGGTCATAGCGACCTAA 144 0.5208 MSCNGCRVLRRGCNETCALRSCLQWIESPESQKTPLSSSLSSSVIAT. 48
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03593 47 Pfam Lateral organ boundaries (LOB) domain 2 24 IPR004883 -
Seca8g03593 47 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03593 Seca-Chr8 103397850 103397993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03593 1 32 AS2 family AT3G49940 78.125 2.65e-14 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g03593 LOB 2.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03593 - - gmx:100781993 69.3218