Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03591 ATGGCTCTCGAAGCTCTCAACTCACCCACCACCACTGCCCCATCCTTCCCCTTTGACGAACCAAGCCTCCGATACCCAGAGCCATGGGCAAAACGAAAGCGTTCCAAGCGTCCTCGTTTGGACCACCCTTCATGCACCGAGGAAGAGTATCTCGCTATCTGCCTCATCATGCTCGCTCGCGGCGGCACCACCACCGATTCCAACCGAACCACTCCTCCACCTGAGTCAAAGCCACAACTGGCAACCGATCCAGCCGGTTCCGTCAAGCTAAGTTACAAATGTTCTGTGTGCAACAAGGCTTTCCCATCTTACCAAGCACTCGGTGGACACAAGGCCAGTCACCGGAAACTCTCTGCCGTCGGTGAAGATCAATCCACCTCCTCAGCCGCCACCACCAGTTCTGCTAACACCGCCGCCGCTTCCATCGGGGGAGTCAGGACTCACGAGTGTTCCATCTGCCATAAATGTTTCCCCACCGGACAGGCCTTGGGTGGACACAAACGCTGCCACTACGAAGGTGGTGGTGGTGGTAGCAGCAGCGCTGTCACCGCCTCTGAAGGTGTTGGCTCCACCCACACCGTCAGCCATAGCCACCGCGATTTCGATCTCAACATCCCTGCTTTTCCAGAGTTTTCTACCAAGGTGGGAGAAGACGAGGTTGAGAGTCCTCACCCTGTGATGAAGATGAAGAAGCCCCGTGTTTTCGTCATACCCAAGATCGAAATCCCTCAGCTCCAGTGA 741 0.5614 MALEALNSPTTTAPSFPFDEPSLRYPEPWAKRKRSKRPRLDHPSCTEEEYLAICLIMLARGGTTTDSNRTTPPPESKPQLATDPAGSVKLSYKCSVCNKAFPSYQALGGHKASHRKLSAVGEDQSTSSAATTSSANTAAASIGGVRTHECSICHKCFPTGQALGGHKRCHYEGGGGGSSSAVTASEGVGSTHTVSHSHRDFDLNIPAFPEFSTKVGEDEVESPHPVMKMKKPRVFVIPKIEIPQLQ. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03591 246 Gene3D Classic Zinc Finger 90 170 - -
Seca8g03591 246 MobiDBLite consensus disorder prediction 1 42 - -
Seca8g03591 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Seca8g03591 246 SMART c2h2final6 92 114 IPR013087 -
Seca8g03591 246 SMART c2h2final6 148 170 IPR013087 -
Seca8g03591 246 MobiDBLite consensus disorder prediction 119 136 - -
Seca8g03591 246 MobiDBLite consensus disorder prediction 178 192 - -
Seca8g03591 246 MobiDBLite consensus disorder prediction 1 17 - -
Seca8g03591 246 MobiDBLite consensus disorder prediction 117 136 - -
Seca8g03591 246 Pfam C2H2-type zinc finger 148 171 - -
Seca8g03591 246 Pfam C2H2-type zinc finger 92 116 - -
Seca8g03591 246 MobiDBLite consensus disorder prediction 174 196 - -
Seca8g03591 246 SUPERFAMILY beta-beta-alpha zinc fingers 92 170 IPR036236 -
Seca8g03591 246 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 209 IPR044653 GO:0003700
Seca8g03591 246 MobiDBLite consensus disorder prediction 63 84 - -
Seca8g03591 246 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Seca8g03591 246 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Seca8g03591 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 170 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03591 Seca-Chr8 103254816 103255577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03591 1 242 C2H2 Transcription Factor Family AT1G27730 54.183 1.91e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g03591 zf-C2H2_6 3.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03591 - - gmx:547886 334.339