Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03585 ATGGAATCTGTAGGAGCTTTCTTCCCTGATTCAGAATGGGATTACTTTCGCAAAATGTTTGCCAGTGAGGAGCATGATTACTACTCACCACAATTTCTCACTCAATGTTCACTCATGTTTGGAGGAGAAGATGATGAATTGAACATTGCAACACAATTTTGCTCTGCTCCTGAAGCTGGTGAAAATGAGTGTATGTTTTATTCTTTAGATGCTCACAACTCAAATTCACACCACATTTCTCAAGAAAATAGTTATAGCAGCAATTGTACTGGTGACACTGTCTTCAATTCCAATCCTGGTCATACAAACTACTTTTTGAATTACCCTGATCATGTGGTACTAGAAAATAATACTTGTGTACCTTTGGATGAGAAAAATATTGCCTCTTTTGTCCCATCGGTTACTGACATTGTAATGGAAGAGAATGTCAAGTTGAATGAAGATGTGGGAAGTGACAACAACCACAGTTCAATGGAACCTATTGCTTTCCCAACCAAACAGTTGCAGCTCAAAAGGAAGCTTGCTGAAGATCAAATTGACAACAGATCTGAGAATCAGAAGAAAAAGGCTCGTGTTCTAAAAGATGGGCAAGGATGCATGAAAAATGCACGGTCTAAGAAGAATCAGAAACTTGTTAGTAATGGGGAAGAGTCAGAAGAGACTAATAATACAGGGTCAAATGGACAGAGCTCTAGCAGTAACATCTCAGAGGATGATAATGCTTCTCAGGAAAATAGTGGAGGAGCTACTTCAGGATCTAAATCTGCTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGGGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGAAGAGAAGAGAGAGAATAAATGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTACGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATTTATGGATGTATGCTCCGCTTGCTTATAATGGACTTGACATTGGACTCAATCTCAACATGAAGAGTTCTCTACCACTATGA 1068 0.3904 MESVGAFFPDSEWDYFRKMFASEEHDYYSPQFLTQCSLMFGGEDDELNIATQFCSAPEAGENECMFYSLDAHNSNSHHISQENSYSSNCTGDTVFNSNPGHTNYFLNYPDHVVLENNTCVPLDEKNIASFVPSVTDIVMEENVKLNEDVGSDNNHSSMEPIAFPTKQLQLKRKLAEDQIDNRSENQKKKARVLKDGQGCMKNARSKKNQKLVSNGEESEETNNTGSNGQSSSSNISEDDNASQENSGGATSGSKSALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLNMKSSLPL. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03585 355 SMART finulus 275 324 IPR011598 GO:0046983
Seca8g03585 355 FunFam Basic helix-loop-helix transcription factor 270 327 - -
Seca8g03585 355 Gene3D - 268 326 IPR036638 GO:0046983
Seca8g03585 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 333 IPR036638 GO:0046983
Seca8g03585 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 101 341 - -
Seca8g03585 355 MobiDBLite consensus disorder prediction 172 281 - -
Seca8g03585 355 CDD bHLH_AtIND_like 270 332 - -
Seca8g03585 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Seca8g03585 355 MobiDBLite consensus disorder prediction 172 195 - -
Seca8g03585 355 Pfam Helix-loop-helix DNA-binding domain 279 319 IPR011598 GO:0046983
Seca8g03585 355 MobiDBLite consensus disorder prediction 202 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03585 Seca-Chr8 103025485 103027284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03585 237 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 79.825 2.90e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g03585 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03585 - - gmx:100780907 440.654