Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03583 ATGGGCTCGACATGCTGTGAGGGGCTTATTCAAAATTGTAATGGGGATTTCATTGTTGGGTTTTCTGCTAACTTTGATGTTTGCACAGTAGTTAAAGCTGAGTTATGGGGATTGCTTGAGGGTTTGCGATTGGCTTGCATGGTGGAAATAACTACCTTTGTTATCAATATTGATTCTCAGGTTGCTCTCCAATTGATCATGGGTCCTAAAAAGAGCCTAAACCACACAAAAACCCATGTTCTTCCTCCAATTCCTCCTCCACTTAATGTTCTTTTCCTCCATCAACTGCCACGATGGCATGCAGGACCATTTTGGGTTGACGACACAAAGTTGAATGAAATGAATGGAAGGATGATTGAAGAGAATCCTTTGTGTGTTGTTGTAGCCCAACGCAAAGAAGAGAGGAAGGCTCGTTTGCAGAAGGTTAAATGGCCACAAGGGAGACGTTCCTTGGATGGTATTGAGCTCAATCCAGAGGCAAGGTTAGCCTGGTCAGAGGATGGGAGTTCATCGAGTCCAAAGCCTCCAATAGGTGCAATGGAACTAGGGTTTAGATATATGAGAAACAGTCGAAATGGCACAGATCCATTAGTAGTTCCTCAGGGTCTAATTGGTCCAATGATACCATTGCTCTTTGATGGTTCAAGAGTTCTTGTAGCTCCTATCAAGAATCAACATCCCGGTGCATTGTCTAACACACTTGCCTCAACTTTGGCTTCTGCCACCCTAGAAAATTAG 738 0.4363 MGSTCCEGLIQNCNGDFIVGFSANFDVCTVVKAELWGLLEGLRLACMVEITTFVINIDSQVALQLIMGPKKSLNHTKTHVLPPIPPPLNVLFLHQLPRWHAGPFWVDDTKLNEMNGRMIEENPLCVVVAQRKEERKARLQKVKWPQGRRSLDGIELNPEARLAWSEDGSSSSPKPPIGAMELGFRYMRNSRNGTDPLVVPQGLIGPMIPLLFDGSRVLVAPIKNQHPGALSNTLASTLASATLEN. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03583 245 Pfam Reverse transcriptase-like 8 72 IPR002156 GO:0003676|GO:0004523
Seca8g03583 245 CDD RNase_H_like 8 66 IPR044730 -
Seca8g03583 245 SUPERFAMILY Ribonuclease H-like 14 68 IPR012337 -
Seca8g03583 245 Gene3D - 2 102 IPR036397 GO:0003676
Seca8g03583 245 PANTHER OS05G0353850 PROTEIN 6 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03583 Seca-Chr8 103001565 103005853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03583 111 140 Eukaryotic Initiation Factors Gene Family AT2G23350 66.667 1.80e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03583 K13126 - gmx:100783163 88.1965