Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03578 ATGGCCAATTTGCAAACCTTCCCCACCGAGAAGGTTGTTCCTGATCAATTCCCAGCAGGTCTCAGCGTTCTTGCAGTTGATAATGATAACACAGTCCTTAAACTCATTGAGGAAATGTGTATTCGATGCCATTATCGTGTTACCACATGCTCTGAGGCTCGAGCTGCCTTGAATCTTTTGAGTGAAAGAAAGGGTTCTTTTGATATCCTACTAATTGATGTTCATATACCAGACATGGATGCCTATGGATTTCTTCACCATGTTTCCCAAAGATTGAATCTTCCTGTTATTATGATGTCTATTGATGCTGCGAAAAGTGCTGTCATGAAGGCTATTCGACATGGGGCTTGTGATTTTTGGACTAAGCCTTTGTGCGAGCAACAGTTCAAGAATGTATGGCAGCATTATGTAAGGAAAGCCTTGAGAGAGAATAAACAAGAAAAAAGATTTAGCAACTTGGAAGATATTCGAGATGATGATCAGAGAAAACAGGGGAAAGATTGTTCTGAATTTCCTTCTTCTGTTGTTGATGCAGCAGAAGGAGTCTTGAATGCCCCAAAAGAGACCACTTCAAATCAAACCGATGCTGATGAATCAGAGAATCTTTATCGACCTCCAACAAAGAAGCCTCGTGTAGTATGGACAGAAGTATTGCATCGACAATTTGTTAGAGCTGTGACACAACTCGGGCTTGATAAGGCTATGCCAAAGAGAATTCTTGAAGTGATGAATGTTCCTGGTTTGACAAGAGAGAATGTTGGTAGTCATTTACAGAAATTTAGACTTCATATGAAGAAAGCATTTGAAGAGACAAGACAACGGAATCAAATGCCAAATGTCTTCCCTATGAGTATAAAATCGAATGTGGAGGCATATGGAGGATTTAACATTGGAGCACTGACTGGCCTTCAACCTGAGCTCAGAAATAACTTAATTCCAAGAGAAGATCAAAGTGTCTGGCCTTCTAACTCTTCCCAAGCCATGCCATATAGAGGAGATCAAAGTGCCCAATTGATATCATCTTTGCAGTGGCCCCCTAACTCTTCCCAAGCCATGCCATATAGCCACCCTCTTATAAAATATCCTTCTGATAATAACATTACCAAGGATTTTCCGCCATCCAACATAACTGCATCATCAATATATGGACCATTGTCTCCATTTAAGACAATTGATTCAGGTGGAGAATTTAACATATAG 1200 0.4025 MANLQTFPTEKVVPDQFPAGLSVLAVDNDNTVLKLIEEMCIRCHYRVTTCSEARAALNLLSERKGSFDILLIDVHIPDMDAYGFLHHVSQRLNLPVIMMSIDAAKSAVMKAIRHGACDFWTKPLCEQQFKNVWQHYVRKALRENKQEKRFSNLEDIRDDDQRKQGKDCSEFPSSVVDAAEGVLNAPKETTSNQTDADESENLYRPPTKKPRVVWTEVLHRQFVRAVTQLGLDKAMPKRILEVMNVPGLTRENVGSHLQKFRLHMKKAFEETRQRNQMPNVFPMSIKSNVEAYGGFNIGALTGLQPELRNNLIPREDQSVWPSNSSQAMPYRGDQSAQLISSLQWPPNSSQAMPYSHPLIKYPSDNNITKDFPPSNITASSIYGPLSPFKTIDSGGEFNI. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03578 399 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Seca8g03578 399 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Seca8g03578 399 SMART REC_2 21 133 IPR001789 GO:0000160
Seca8g03578 399 SUPERFAMILY CheY-like 20 150 IPR011006 -
Seca8g03578 399 FunFam Two-component response regulator 205 267 - -
Seca8g03578 399 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 312 IPR045279 GO:0009736
Seca8g03578 399 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Seca8g03578 399 CDD REC_typeB_ARR-like 23 135 - -
Seca8g03578 399 MobiDBLite consensus disorder prediction 181 206 - -
Seca8g03578 399 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 263 IPR006447 GO:0003677
Seca8g03578 399 Gene3D - 206 267 - -
Seca8g03578 399 Gene3D - 21 156 - -
Seca8g03578 399 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03578 Seca-Chr8 102867699 102870329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03578 15 279 Response Regulator Gene Family AT2G25180 44.361 3.12e-62 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca8g03578 Response_reg 1e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03578 - K14491 pcin:129311779 347.821