Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03572 ATGGGAACGGAGAGTTACACATACATGGGACGCAGTTTCAGCGAACTGAGCATCAACGACGAATCCTCTTCTTCCGCTTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGTCACCGCTTCTTCCCAATCACGACGCCTCCTCATCGCTTGCGCTTCCGAGAATTCCGACGATTTCATCCGTCAACTCGTTTCCGATCTCCACTCATCTTCAATCGACGAACAAAAACAAGCCGCTCTGGAAATCCGATTACTCGCCAAGAACAAACCGGAAAATCGCATCAAAATCGCCAAAGCCGGCGCAATCAAACCCTTAGTTTCCCTCATTTCTTCGCAAGACCTCCAACTTCAAGAATACGGCGTCACCGCGATTTTGAACCTCTCCCTGTGCGATGAGAACAAAGAGCTCATAGCTTCTTCGGGAGCGATTAAGCCTCTGGTTCGGGCGCTAAACACGGGAACCGCGACGGCGAAGGAGAACGCGGCGTGCGCACTGCTTCGCCTCTCGCAGGTGGAAGAGAGCAAGGCAGCGATCGGGAGGTCCGGCGCGATTCCTCTGCTGGTGAACCTTCTAGAAACCGGCGGCTTCCGCGGGAAGAAGGACGCGTCGACGACGCTGTACTCGCTCTGCAGTGTGAAAGAGAACAAGATGAGAGCGGTGAAGGCGGGAATCATGAAGGTGCTGGTTGAATTGATGGCGGATTTCGAATCGAACATGGTGGACAAATCGGCTTATGTAGTTAGCGTGCTGGTGTCGGTGCCAGAGGCGAAGGCGGCGCTGGTGGAGGAAGGTGGTGTTCCGGTGCTGGTGGAGATCGTGGAGGTTGGGTCGCAGAGACAGAAAGAAATCGCGGTGGTTATTCTATTACAGCTGTGTGAGGATAGCGTGACTTATCGAACCATGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTTGCTTTGACTCAATCCGGCACTAATCGCGCCAAGCAAAAGGCAGAGAAACTAATTGAGCTTCTGCGGCAACCAAGATCCGGCAACGTCGCTGCACGCACGTCAGAAGTGGTAGCATAA 1056 0.5379 MGTESYTYMGRSFSELSINDESSSSAFSDCNSDRSGEFVTASSQSRRLLIACASENSDDFIRQLVSDLHSSSIDEQKQAALEIRLLAKNKPENRIKIAKAGAIKPLVSLISSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALNTGTATAKENAACALLRLSQVEESKAAIGRSGAIPLLVNLLETGGFRGKKDASTTLYSLCSVKENKMRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVSVPEAKAALVEEGGVPVLVEIVEVGSQRQKEIAVVILLQLCEDSVTYRTMVAREGAIPPLVALTQSGTNRAKQKAEKLIELLRQPRSGNVAARTSEVVA. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03572 351 PANTHER U BOX DOMAIN-CONTAINING 60 335 - -
Seca8g03572 351 Gene3D - 251 336 IPR011989 -
Seca8g03572 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Seca8g03572 351 SUPERFAMILY ARM repeat 57 334 IPR016024 -
Seca8g03572 351 SMART arm_5 90 130 IPR000225 GO:0005515
Seca8g03572 351 SMART arm_5 296 336 IPR000225 GO:0005515
Seca8g03572 351 SMART arm_5 213 253 IPR000225 GO:0005515
Seca8g03572 351 SMART arm_5 131 171 IPR000225 GO:0005515
Seca8g03572 351 SMART arm_5 172 212 IPR000225 GO:0005515
Seca8g03572 351 SMART arm_5 254 294 IPR000225 GO:0005515
Seca8g03572 351 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Seca8g03572 351 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Seca8g03572 351 Pfam Armadillo/beta-catenin-like repeat 174 212 IPR000225 GO:0005515
Seca8g03572 351 FunFam U-box domain-containing protein 4 45 350 - -
Seca8g03572 351 Gene3D - 53 250 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03572 Seca-Chr8 102794858 102796780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03572 25 343 U-box Gene Family AT2G23140 46.809 1.85e-85 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03572 - - gmx:100797550 585.104