Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03568 ATGGGTGATAATGAAGTTGATTCAACTACACCATCAAAAGCTTTCAATGATTCAGTGAACGCATCAGAGGAATGGATTCCTATGCGTGATGAAGAACTGAAACCCGTAATTGGAATGGTCTTTGATACTTTAGAAGAAGGAGAAGACTTTTATAAAAGGTATGCACATGTTGCTGGTTTTAGTATATGCAAATCATCTGAAACAAAAGATAAAAATGGCATGAAATGGAAGTATTTTCTTTGTTCAAAACAAGAGTCTCCAGATGAATTTGAATTGAAATGGAAAACTATTATCAGTGATTTTAAGTTGGAAGAAAATGGTTGGCTTTCACAAATGTATGACATGCGAAGTATGTGGATGCCTACTTATTTTAGAGATATGTTTACGGCTGGAATATTGAGAACAACCTCACGATCAGAGAGTGAAAATTCATTCTTTGGCAATTATTTGAATAAGAACCTTAGCTTGGTAGAATTCTGGATGAGGTTTGATTCGGCAATAGAATCGCAAAGGCATAGAGAATTACTTGCAGATAATGATACACTTAATGCTATGCCAGAATTAAAGTTGCATAAGGATATAGAGAAGCATAGCAGGGAAATTTACACTCATGAAATTTTTTACATATTTCAAAGTGAGTTATGGAGTGCATGTGTTGATTGTGGAGTCGAAGAAAAAAGAAAGGAAAATGGGCAATCATTAATTTTTATACTTGATCATATTATGGTCAATGACGGCAAAATCAGCAAACTTAGGGAAGTTGTTTACAATGCTTCCAATCACATTGCGCAATGTTCATGTAAAATGTTTGAATCTGAAGGCATGTCATGTCGACATATCCTTTTTGTGTTAAAGGGTAAAGGCTTGAATAAAATCCCAAGCCATTACATTGTTAATAGAAGGACCAAGTTTGCAACTAGCAAACCAATTTTTGATTATGATGGCAATATATTGGAGGCATGTTCAGAATTGCAAAAAGCTTCTAATATTGAATTGAAATTAAGTGAAGCAAAAGGTGATGTTGGACCAAGCAAGTTAGATGAATTAGAGTCTTTTATTGGCTCCAATGTGCCTAAGGATATTGAAATTCTTCCTCCTGAACCTTCAAATACCAAAGGATGTGGAAAACGAATTAGGGGGGAAAGAGAAGGCAATGGAACAACAACGAAAGAGAACAAGACTTTGTAA 1188 0.3476 MGDNEVDSTTPSKAFNDSVNASEEWIPMRDEELKPVIGMVFDTLEEGEDFYKRYAHVAGFSICKSSETKDKNGMKWKYFLCSKQESPDEFELKWKTIISDFKLEENGWLSQMYDMRSMWMPTYFRDMFTAGILRTTSRSESENSFFGNYLNKNLSLVEFWMRFDSAIESQRHRELLADNDTLNAMPELKLHKDIEKHSREIYTHEIFYIFQSELWSACVDCGVEEKRKENGQSLIFILDHIMVNDGKISKLREVVYNASNHIAQCSCKMFESEGMSCRHILFVLKGKGLNKIPSHYIVNRRTKFATSKPIFDYDGNILEACSELQKASNIELKLSEAKGDVGPSKLDELESFIGSNVPKDIEILPPEPSNTKGCGKRIRGEREGNGTTTKENKTL. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03568 395 ProSiteProfiles Zinc finger SWIM-type profile. 252 288 IPR007527 GO:0008270
Seca8g03568 395 MobiDBLite consensus disorder prediction 360 395 - -
Seca8g03568 395 SMART 26again6 263 290 IPR006564 GO:0008270
Seca8g03568 395 MobiDBLite consensus disorder prediction 374 395 - -
Seca8g03568 395 Pfam SWIM zinc finger 263 284 IPR007527 GO:0008270
Seca8g03568 395 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 85 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03568 Seca-Chr8 102693147 102695334 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g03568 SWIM 0.00077 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03568 - - mtr:120577464 414.075