Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03563 ATGTTGTGTGCTTGCTCCGGGGAGCAATTCAAATTTGAGGAGGCACCACAGTCACCGGAGTCCCTAGCAACAAGGGATTTCTCTGCCAGTGGAATATCTTCAAGGACTGGGGATTGGGAACCGAAATTTGATGAAGCCCAAGTAGAAGACGTTGAATCTACTCTCAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGGGCTTTGCTGGGGAGACTTGAATATCAAAGAGGGAATTTTGATGCTGCCCTTCAAGTGTTTCAGGGGATAGAAATCAGGGCTTTGACCCCAAGGATGATCAGGGCTATAGCTGAAAGAACCAAGCAAAGAAAACCACGTTTCAAGGCAGATAATGTGCTTCCCAATTTGATGTCAATGCATTCAATAAGCCTCCTTCTTGAGGCAATTTTGCTTAAAGCCAAATCCTTAGAGGAACTTGGGAGACACACTGAGGCTGCAAAGGAGTGCAGAATAATTGTGGATACAGTTGAATCTGCTTTTCCTAATGGAATGGTTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCACAAAGCATTGGAGTTGCTTCCAAATCTATGGATCAAGGCAGGCCTTCTAGATGAAGCTGTCACTGCTTACCGACTGGCCCTGGTCAAGCCCTGGAATTTGGAGCCACTTAGGTTGGCCTGTCTACAAAAAGATTTAGCTACCACATTGCTCTATGGTGGTGTTGAAGTAAACCTACCCTCTAAGTTGCAAGGGAAGGGTCCAACAACACCTATGAGTAACATTGAAGAAGCAATACTTTTGCTACTATTACTCTTAGGAAAGATGGCACTTCAGGAAATAGACTGGGATGCAGAAATAATGGATCATCTTACATTTTCACTCTCAATTTCTGGGATGTTTGAATCATTGGCAGATCGTGTAGAGCAGATCCTTCCCGGTATCTATGATCGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACAGTGCAGCAGGACAGAATGAAGCAGCCTTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCAGAAGCAAAGCATAAACCCCATTTTCCTTCATTTTTATTTGGTGCAAAGCTGTGTTCCCAATATCCTAACTATGCTCATGAAGGCATTAAATTTTCAAGGAAAGTTATTGATCTAGCCAAGCATCAAAATGAGCATTTTTTGTGTCAAGGCAAGAAATTTCTTGGTATTTGCTATGGGGCTGCGGCTAGAAAATCTGTACTGGATTCTGAAAGAATTACATTTCAAAGAGAGTCTTTGAACTTTCTAAATGAAGCTGCTCTAACTGGAAATGATGACCCAGAAGTGATATTCAGCCTTGGATTAGAAAATGCACTTCAAAGGAATCTAAATGCAGCTTATTACAACATAATGATGTACTCAGATATGATGGTTGGCAGCTCTAGAAGAGGTTGGCAGCTGTTAGCACTCATAGTATCTGCACAGCAGAGGTTTAAGGATGCAGTAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGAGGATAGATCAATTAGAACTACTAAGACTAAAATCTGTACTTCAAATTGCACAGCAGCAACCCAAGCAAGCAATAGAGACCTACAGAATCTTGCTATCAGTAATAGAAGCAAAAAAGGAGTTTTGGCTTCAAGCTAAGAACTTTGATCAAGAAAAAATATCCAAGGATGAGGCAATAACAGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGACTTGGCAACCATTTATGCAGATCTTAGTTCTTTCCTTGATGCAAAAGCTTGTGTTGACAAAGCCCAATTGATAGAATTTTTTTCTCCCAGAAGTTGGCATATTACAGGGATGTTGTTTGAAGCTCAATCATTATACAAGGAGGCCTTTGTTTCCTTCTCAATCTCATTATCAATAGAACCAGATTACATTCCCAGTATCATTTCAACTGCAGAATTGTTGCTTAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGTTTTTTAATGAATGCTTTGCGATTGGAACCAACAAACCATGATGCGTGGTTCAACCTTGGATTAGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGTTTTCAAGCTGCATATGAGCTGAAACTTTCAGCTCCAGTGCAAAAAATTGAGTGA 2148 0.4078 MLCACSGEQFKFEEAPQSPESLATRDFSASGISSRTGDWEPKFDEAQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIEIRALTPRMIRAIAERTKQRKPRFKADNVLPNLMSMHSISLLLEAILLKAKSLEELGRHTEAAKECRIIVDTVESAFPNGMVEGIGEDCKLQEMFHKALELLPNLWIKAGLLDEAVTAYRLALVKPWNLEPLRLACLQKDLATTLLYGGVEVNLPSKLQGKGPTTPMSNIEEAILLLLLLLGKMALQEIDWDAEIMDHLTFSLSISGMFESLADRVEQILPGIYDRAERWYFLALCYSAAGQNEAALNLLRKACGSSEAKHKPHFPSFLFGAKLCSQYPNYAHEGIKFSRKVIDLAKHQNEHFLCQGKKFLGICYGAAARKSVLDSERITFQRESLNFLNEAALTGNDDPEVIFSLGLENALQRNLNAAYYNIMMYSDMMVGSSRRGWQLLALIVSAQQRFKDAVTIVDFALDEAGRIDQLELLRLKSVLQIAQQQPKQAIETYRILLSVIEAKKEFWLQAKNFDQEKISKDEAITERKLEMEAWQDLATIYADLSSFLDAKACVDKAQLIEFFSPRSWHITGMLFEAQSLYKEAFVSFSISLSIEPDYIPSIISTAELLLKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQKIE. 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03563 715 Gene3D Tetratricopeptide repeat domain 14 216 IPR011990 GO:0005515
Seca8g03563 715 SUPERFAMILY TPR-like 65 461 IPR011990 GO:0005515
Seca8g03563 715 Gene3D Tetratricopeptide repeat domain 257 548 IPR011990 GO:0005515
Seca8g03563 715 SUPERFAMILY TPR-like 302 542 IPR011990 GO:0005515
Seca8g03563 715 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Seca8g03563 715 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Seca8g03563 715 Coils Coil 56 76 - -
Seca8g03563 715 Gene3D Tetratricopeptide repeat domain 549 657 IPR011990 GO:0005515
Seca8g03563 715 SMART tpr_5 572 605 IPR019734 GO:0005515
Seca8g03563 715 SMART tpr_5 606 639 IPR019734 GO:0005515
Seca8g03563 715 SMART tpr_5 676 709 IPR019734 GO:0005515
Seca8g03563 715 SMART tpr_5 317 350 IPR019734 GO:0005515
Seca8g03563 715 MobiDBLite consensus disorder prediction 15 34 - -
Seca8g03563 715 Pfam Tetratricopeptide repeat 317 347 IPR019734 GO:0005515
Seca8g03563 715 SUPERFAMILY TPR-like 562 706 IPR011990 GO:0005515
Seca8g03563 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Seca8g03563 715 Gene3D Tetratricopeptide repeat domain 658 711 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03563 Seca-Chr8 102509200 102514033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03563 1 712 Calmodulin-binding Proteins AT1G27460 58.520 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03563 K21843 - gmx:100799086 1210.67