Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03539 CAACTTTCACGAATACTGTGTTCCTGCACTTACCGTTCGCACTTAGCACACAACGTTTTTGTTCTAAATTCTAATTATAATCTTCAGATTGTTCGAGAAGAAACAGAAAGAAAAAGCTCCGTAGCCATGGCGGTGTTGTCAGAAGTGATGGAGGATGATGAACTTGACGAAGAACCAGGCGAGGTTATCGAATCGGCACCGCCCCAGAAGGTAGGCGAAGAGAGGCAACTCGGTAGTAACTCCTCTCTCAAAAAGAAGCTCCTCAAAAGCGGACATGGATGGGAAACCCCCGATTTCAACGACCAAGTCACTGTTCACTATGTCGGAACTTCACCTAACGGAACAAAGTTCAATTCCACTAGGGATTCAGATCAACCTCTGACATTCACTCTTGGTCAAGGTAAAGTGTATGCTGGGTTGGATCATGGGATTATCACCATGAAGAAGGGAGAGGTGGCATTGTTCACGTTACTTGCTGAGTCTGGAGGAGTTCCACATGACTCCAACTCGGTTGTGCAGTTTGAGGTGGAACTCATTTCGTGGATCAATGTGGTGGATGTTTGCAAAGATGGTGGAATTATCAAGAAAATTATGGAGAAGGGGAAAGGGAATAAGCGGCCTGGTGATCTAGATGAAGTCCTTGTGAAGTATCAGGTGGCACTAGTTGATGGTACTGTTGTTGCAGAAACACCAGAAGCAGGAGTTGAATTTCATGTGAAGGATGGTATTATTGTTGAGTTGTACTCTTATTTTATTCAGCATGAACAAAGAATATAA 777 0.4389 QLSRILCSCTYRSHLAHNVFVLNSNYNLQIVREETERKSSVAMAVLSEVMEDDELDEEPGEVIESAPPQKVGEERQLGSNSSLKKKLLKSGHGWETPDFNDQVTVHYVGTSPNGTKFNSTRDSDQPLTFTLGQGKVYAGLDHGIITMKKGEVALFTLLAESGGVPHDSNSVVQFEVELISWINVVDVCKDGGIIKKIMEKGKGNKRPGDLDEVLVKYQVALVDGTVVAETPEAGVEFHVKDGIIVELYSYFIQHEQRI. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03539 258 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 96 179 IPR001179 GO:0003755
Seca8g03539 258 Gene3D - 74 184 IPR046357 GO:0003755
Seca8g03539 258 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 100 188 IPR001179 GO:0003755
Seca8g03539 258 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 66 184 - -
Seca8g03539 258 SUPERFAMILY FKBP-like 186 249 - -
Seca8g03539 258 Gene3D - 185 253 IPR046357 GO:0003755
Seca8g03539 258 SUPERFAMILY FKBP-like 79 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03539 Seca-Chr8 101963052 101964198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03539 70 242 Calmodulin-binding Proteins AT3G25230 54.749 2.07e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03539 K09571 - ming:122073131 267.314