Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03538 ATGGAGGATGATGAACTTGACGAAGAACCAGGCGAGGTCATCGAATCGGCACCGCCCCAGAAGGTCGGCGAAGAGAGGCAACTCGGTAGCAATTCCTCTCTCAAAAAGAAGCTCCTCAAAAGCGGACATGGATGGGAAACCCCCGACTTCAACGACCAAGTTACTGTTCACTATGTTGGAACTTTACCTAATGGAACAAAGTTCAATTCCACTAGGGATTCAGATCAACCTCTGACATTCACTCTTGGTCAAGGTAAAGTGTATGCTGGGTTGGATCATGGGATTATCACAATGAAGAAGGGAGAGGTGGCATTGTTCACGTTACCTGCTGAGGCTGGAGGAGTTCCACATGACTCCAACTCGGTTGTGCAGTTTGAGGTGGAACTCATTTCGTGGATCAAGGTGGTGGATGTTTGCAAAGATGGTGGAATTATCAAGAAAATTATGGTGAAGGGGAAAGGGAATGAGCGGCCTGGTGATCTAGATGAAGTCCTTGTGAAGTATCAGGTGGCACTAGTTGATGGTACTGTTGTTGCAGAAACACCAGAAGCAGGAGTTGAATTTCATGTGAGGGATGGTCATCTCTTTCCTAGATTGCCAAAAGTAATCATGACTATGACAAGGGGCGAGAAGGCTGAGTTAGTTGTTCAACCTCACTATGCCTTTGGGGAGAAGGGGAGAGAAGCTGGCAGCGGGCTCCATTCAATTCCCCCAAATTCAGTGCTGCATGTTAATATTGAATTGGTGCCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCATGGTGCTTAAGAAGATTGTGAAAGAAGGGGAGGGTGCTTTAACAGCCGGTGAGGGTGCAAATGTTACTGGTAAGAAAAAGGCATGCATTTAA 876 0.4658 MEDDELDEEPGEVIESAPPQKVGEERQLGSNSSLKKKLLKSGHGWETPDFNDQVTVHYVGTLPNGTKFNSTRDSDQPLTFTLGQGKVYAGLDHGIITMKKGEVALFTLPAEAGGVPHDSNSVVQFEVELISWIKVVDVCKDGGIIKKIMVKGKGNERPGDLDEVLVKYQVALVDGTVVAETPEAGVEFHVRDGHLFPRLPKVIMTMTRGEKAELVVQPHYAFGEKGREAGSGLHSIPPNSVLHVNIELVPFKPVINVTGDSMVLKKIVKEGEGALTAGEGANVTGKKKACI. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03538 291 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 157 249 IPR001179 GO:0003755
Seca8g03538 291 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 130 IPR001179 GO:0003755
Seca8g03538 291 Gene3D - 135 252 IPR046357 GO:0003755
Seca8g03538 291 MobiDBLite consensus disorder prediction 1 33 - -
Seca8g03538 291 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 51 252 IPR001179 GO:0003755
Seca8g03538 291 SUPERFAMILY FKBP-like 137 252 - -
Seca8g03538 291 Gene3D - 26 134 IPR046357 GO:0003755
Seca8g03538 291 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 142 253 - -
Seca8g03538 291 SUPERFAMILY FKBP-like 31 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03538 Seca-Chr8 101821382 101823293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03538 21 283 Calmodulin-binding Proteins AT3G25230 53.160 6.09e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03538 K09571 - gmx:100798382 402.905