Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03535 ATGAAGATTGATGCTGTGCTGGGTCTACAAACCGCCATGAAAGGTGGTGTTTTGGGTGGCAACACCACTGAGAAATTGGATCTGAAGGTGATGATTGAGGAGATGGAGTCAATTGATGTCCCTTCAGTGTTTATCTGTCCAATCTCACTTGAGCCAATGCAGGATCCTGTGACCCTTTGCACTGGTCAAACCTATGACAGATCCAACATCCTCAAATGGTTCTCACTTGGTCACAACACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCTGTCACCCCCAACAAGACTCTCAGCCAGTTAATCCTCACTTGGTTCTCACAGAAGTATTTGGCCATGAAGAAGAAGCTTGAGGATGTGCAAGGAAGAGTCTTGGACCTCTTGGACAGGCTCAAGAAGGTAAAGGGTCAAGCTAGAGTTAGAGCTCTTAAAGATCTTCGCCAACTTGTTGCTCATGTGTCTGCTAGGAAGACTGTTGCAGAAAATGGTGGACTTGCTTTGGTTTCTTCTTTATTAGGTCCTTTCACTTCCCATGCTGTTGGTTCTGAAGCTATTGGAATCATTGTGAATTTGGATTTAAGCTCAGAGGTGAAGAGGAATCTGATGCATCCAGCAAAGGTATCACTTTTGGTGGATATTATGAATGAGGGAACTATTGAGACAAAGATGAACTGTGCCAAATTGATTGAGATGTTGTTGATGGAAGGGAATGGCACTGAGACAGAGATTGTCTCAAGCTTGAGTCTTTTGGTTGGTTTATTGAGGTTAGTGAGGGATAAGAAACACCCAACTGGGGTCTTAACTGGCCTCATATTACTCAAGGCTATTTGTTCACATGAATCTGTTAGAATCTCTGTGGTAAGCATAGGAGCAATTCCTCAATTAATTGAGCTTTTGCCCACTTTGAATAATGAGTGTTTAGAGATAGCACTGTATATTCTAGAGGTATTGTCAACACTTCCAGAGGGAAGGATGGCTTTGAAAGAATGTCCAAACATAATTCCCAATGTGGTCAAGTTGTTGATGAGAGTCTCAGAGAGCTGCACCCAATTTGCATTGTCAATATTGTGGTCTATCTACAAGCTTGCCCCTGAAGAATGTGCATCACAAGCAGTGGAGGCTGGGTTGGCAGCAAAGCTATTGCTAGTGATTCAGAGTGGCTGTAACCCAGTTTTGAAGCAGATGTCTTCTGAGTTTTTAAAAATGTGTAGTCTGAATTACTCTACAAATATCTTGATTTCCAAATGTATGCTCACCACAACAATACAATAA 1275 0.4227 MKIDAVLGLQTAMKGGVLGGNTTEKLDLKVMIEEMESIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNKTLSQLILTWFSQKYLAMKKKLEDVQGRVLDLLDRLKKVKGQARVRALKDLRQLVAHVSARKTVAENGGLALVSSLLGPFTSHAVGSEAIGIIVNLDLSSEVKRNLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLMEGNGTETEIVSSLSLLVGLLRLVRDKKHPTGVLTGLILLKAICSHESVRISVVSIGAIPQLIELLPTLNNECLEIALYILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSESCTQFALSILWSIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSTNILISKCMLTTTIQ. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03535 424 SUPERFAMILY RING/U-box 34 110 - -
Seca8g03535 424 SUPERFAMILY ARM repeat 242 410 IPR016024 -
Seca8g03535 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 108 IPR013083 -
Seca8g03535 424 SMART Ubox_2 43 106 IPR003613 GO:0004842|GO:0016567
Seca8g03535 424 CDD RING-Ubox_PUB 41 93 IPR045210 -
Seca8g03535 424 Pfam U-box domain 40 110 IPR003613 GO:0004842|GO:0016567
Seca8g03535 424 SUPERFAMILY ARM repeat 125 257 IPR016024 -
Seca8g03535 424 ProSiteProfiles U-box domain profile. 39 113 IPR003613 GO:0004842|GO:0016567
Seca8g03535 424 PANTHER WDSAM1 PROTEIN 33 410 IPR045185 GO:0061630
Seca8g03535 424 Gene3D - 109 407 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03535 Seca-Chr8 101647656 101648930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03535 1 424 U-box Gene Family AT3G49810 61.625 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03535 - - gmx:100803878 659.833