Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03526 ATGTTCTGCCACGAAGACGAAGCGGTTCGGTTCTCATTCGAAGGCATGTTCACACAAGGTGAAATAGAGGAGCTCTTTTCCCTCATTAACCAACCGGGAGACCCGGCTAGTCCGGGATCCGGTTCACAGGGATCGAACCGGGCGGTTTATTCATCTCACGAGAGAAAGCTGAGGAGAATGCAGTCGAACCGGGAATCAGCAAGACGGTCCCGCTGGAGAAAGAAGAGGCATTTAGAGAACCTCACGAATCAAGTGAACCGGTTGAGAACAGAAAACCGAGAACTGAAAAACCGGCTCGGGTTAACCATGCACAACCATCTCTTACTATCCGTGGAGAATGAACGGCTAAGATCCGAATCCATGGCCCTCCTTGCAAAACTCACGGATCTTTGTCGAACTTTAGAAACCATGCTTTCACAATAG 423 0.4965 MFCHEDEAVRFSFEGMFTQGEIEELFSLINQPGDPASPGSGSQGSNRAVYSSHERKLRRMQSNRESARRSRWRKKRHLENLTNQVNRLRTENRELKNRLGLTMHNHLLLSVENERLRSESMALLAKLTDLCRTLETMLSQ. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03526 140 CDD bZIP_plant_GBF1 56 106 IPR045314 GO:0003700|GO:0006355
Seca8g03526 140 Pfam bZIP transcription factor 55 100 IPR004827 GO:0003700|GO:0006355
Seca8g03526 140 Coils Coil 50 98 - -
Seca8g03526 140 SMART brlzneu 51 115 IPR004827 GO:0003700|GO:0006355
Seca8g03526 140 MobiDBLite consensus disorder prediction 30 76 - -
Seca8g03526 140 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 53 99 IPR004827 GO:0003700|GO:0006355
Seca8g03526 140 PANTHER BZIP TRANSCRIPTION FACTOR 44 39 137 - -
Seca8g03526 140 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 58 73 IPR004827 GO:0003700|GO:0006355
Seca8g03526 140 MobiDBLite consensus disorder prediction 51 67 - -
Seca8g03526 140 FunFam BZIP transcription factor 53 104 - -
Seca8g03526 140 Coils Coil 124 140 - -
Seca8g03526 140 SUPERFAMILY Leucine zipper domain 55 106 IPR046347 GO:0003700|GO:0006355
Seca8g03526 140 Gene3D - 53 106 - -
Seca8g03526 140 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03526 Seca-Chr8 101438733 101439155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03526 8 134 bZIP Transcription Factor Family AT3G49760 36.567 4.60e-19 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca8g03526 bZIP_1 4.2e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03526 - - gmx:102668006 193.741