Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03516 ATGGATCTTGGGGTGGTGGGTTTAGATGGGTTGGTGGGTTCAGACACTAGTGGGTATGTTTCTCTTGGTTCTTCAGATCCTGAACCAAAGCACAAATGGTACGGATCTGGGTTACTTAAGCAAGAGAGATCTGCAGGAGGCATCATTGAAGATGATGACTTGAGAAGCTCCAAAATGGCCAAGACTGAAGATGACTTATCTGCTTCCAAAGCAATGCTGAGAAACTCTTCAGTTCTGAGATCTAATGCCACTCTGTTTTCTTCTGATGGGTATCACCAACAGCAAATGCTGAGCTTCTCTTCTCCAAAACCAGAGACTTTGTTAGTAGACAAGGCATCCCCAAATGCTACATTGCCTTATTCTTACACCCCATTGTCTAGTTACAGCAGAAACACAGGTTACAGTTCCGGCAACATGCATGGGGCTTTTACTGGTTCCAGAGGACCATTCACTCCGTCTCAATGGATGGAACTGGAACACCAAGCTTTGATCTACAAATACATCACAGCAAACGTGCCTGTTCCTTCACATCTTCTAATCCCCATCAGAAAAGCACTTGATTCTGCTGGCTTCTGCAATTTCTCAAACGGACTCCTCAGACCCAATGCATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACTGATCCTGAACCAGGAAGGTGTAGGAGAACAGATGGGAAAAAATGGCGGTGCTCAAGAGATGCCGTTGTGGATCAGAAATATTGTGAGCGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTTACTGGAACAACCACCAATACTAGTACTACTAGTAATCCAAATGGTTCTAAGCTCAATGCTAATAATGCTTCTCCTTCTATTGTGGTTCCTCGCAACAACAGTGCATCCAACAACCTCACTTTTGCACACCAGGAAACCAAGAATATGCATCATCCTCTTGCACCTGATAATACTTCTGCCTCCAACACCATCAACAGGATGTTTATGAATAACAAAGAGAATAATAACGTGAGTGAGAGGATGCAAGATGGTCCTGCCCTTCCAATGCTACCTCCAACTCTTGAGCTGAAACCAAAGGAAAATCCCTTTATGATTCACAAACAGGAAATGCCATATGATGAATCCTCAAGGAATAATAATGAGTTTGGGCTTGTCACTTCTGATTCCCTTCTTAACCCTTCACAGAAAAACTCCACCTTGCTGGGTGGCAGAACCTTTGGTTCTTCACAGAACAACCGAGACACTAATGGGTCCCAACATTCCCTTAGGCATTTCATTGATGACTGTCCCAAACCACAGTCCAATCATCGTTCATGGCCAGACCTTGACATGCAGTCTTCAGATAGGACCCAACTATCAATCTCCATCCCAATGACATCCTCAGACTTCATGTCATTCACTTCCTCACCCACCAATGAAAAGCTCACATTGTCACCTCTTAGGCTATCAAGGGAATTAGACCCAATTCAAATGGGTTTAGGTGTGGGAAGTGCTCTCAATGAATCAAACAACACCACCACTAGGCAAACTAATTGGATCCCAATTACTTGGGAGAGTTCCATGGGTGGTCCACTTGGGGAGGTTCTGAATCTTAGTATTAACAATGCAAGTGATCACTGTGTGAAGAACTCTTCTGCTCTCAATCTCATGACTGATGGGTGGGACAATAGTCCTCCACTAGGGTCATCCCCAACTGGGGTCCTGCAAAAGACAGCATTTGGGTCACTTTCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAGAACAAGAAGACTCAAGAAGGGGCCAGCTTGTGCAATGACCTCTTGGGATCAACTCTTGGGAATGCTTCCTCCTTACCTGCATTGTAA 1875 0.4533 MDLGVVGLDGLVGSDTSGYVSLGSSDPEPKHKWYGSGLLKQERSAGGIIEDDDLRSSKMAKTEDDLSASKAMLRNSSVLRSNATLFSSDGYHQQQMLSFSSPKPETLLVDKASPNATLPYSYTPLSSYSRNTGYSSGNMHGAFTGSRGPFTPSQWMELEHQALIYKYITANVPVPSHLLIPIRKALDSAGFCNFSNGLLRPNALGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALTGTTTNTSTTSNPNGSKLNANNASPSIVVPRNNSASNNLTFAHQETKNMHHPLAPDNTSASNTINRMFMNNKENNNVSERMQDGPALPMLPPTLELKPKENPFMIHKQEMPYDESSRNNNEFGLVTSDSLLNPSQKNSTLLGGRTFGSSQNNRDTNGSQHSLRHFIDDCPKPQSNHRSWPDLDMQSSDRTQLSISIPMTSSDFMSFTSSPTNEKLTLSPLRLSRELDPIQMGLGVGSALNESNNTTTRQTNWIPITWESSMGGPLGEVLNLSINNASDHCVKNSSALNLMTDGWDNSPPLGSSPTGVLQKTAFGSLSNSSAGSSPRAENKKTQEGASLCNDLLGSTLGNASSLPAL. 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03516 624 SMART QLQ_2 148 184 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca8g03516 624 Pfam QLQ 149 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca8g03516 624 PANTHER GROWTH-REGULATING FACTOR 5 112 476 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca8g03516 624 ProSiteProfiles QLQ domain profile. 149 184 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca8g03516 624 Pfam WRC 219 261 IPR014977 -
Seca8g03516 624 MobiDBLite consensus disorder prediction 246 301 - -
Seca8g03516 624 MobiDBLite consensus disorder prediction 393 427 - -
Seca8g03516 624 MobiDBLite consensus disorder prediction 393 452 - -
Seca8g03516 624 MobiDBLite consensus disorder prediction 582 604 - -
Seca8g03516 624 MobiDBLite consensus disorder prediction 265 301 - -
Seca8g03516 624 ProSiteProfiles WRC domain profile. 218 262 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03516 Seca-Chr8 101236558 101240830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03516 1 582 GRF Transcription Factor Family AT2G22840 41.860 1.11e-103 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca8g03516 WRC 5.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03516 - - aprc:113865097 827.78