Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03505 ATGAAGTCTATGAATGATAGAAACACCGATGATGGGAACAATCATAACTGGTTGGGGTTTTCTCTCTCACCCCACATGAAAATGGAGGTTACTTCTTCTGTCCCTCCCCATCATAGTCATCAAGATCATCATCACTACTATCATCACCCTCACCCTTCTAATGCTGTTCCCTCTACTAACTTCTATCACCTGTCACCTTCACACCTAAACACTTCTTCTGGAATCTGTTATGGTATTGGGGAAAACAGTTCCTTTCATTCTTCTTCTTCTCCTTTGGCTATGATGCCACTCAAGTCTGATGGCTCACTTTGCATAATGGAAGCTCTCACCAGATCACAGACACAAGTGATAATGCCAATGCCAACTTCTTCTCCCAAGCTGGAAGATTTCCTTGGTGGTGCAACTTTGGGAGCTCAAGAATATGGTGGACATGAAAGAGAGGCAATGGCTTTGAGCTTAGATAGCATTTACTATAGTCACAATGCAGAACCTCAAACCAACAGAGAACACCATTCTTCTCTTGACCTTCTTTCTGATCCCTTCAGGCAAGTTCAATCCCACCCATACTATTCGGGACTTGCTTGTCATGGGATTTTTCAAACACCATTGGTGGAAGAAACCAAGGAACCCCATGTCACGGTTTGCAGCTCACAAATGGCTCAAGTGGCAGCAGAGGAAGGCATTGCTTACTTTAAAAACTGGGTGGCCCCAAGAGAGTATTCTACTACTCAGCAGACTCTGGACCAGCAGCAAGTGAATAGTAGCATTGGAGAGGATCATGGTGGTTCTTGTTCTGTTGGTGTTGGCACAGTTGGGGTTGGTGAGTTACAGTCATTGAGCCTCTCCATGAGTCCTGGTTCTCAATCTAGCTGTGTCACGATTCCAAGTCAGATCTCATCTTCTGGGACTGACTCAGTGGCTACCATGACAGCAAAGAAGAGAGAGGCTCCTAAGCTTGGCCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTTGGGCAAAGAACTTCACAGTATAGAGGAGTGACAAGGCATAGATGGACTGGTAGATATGAAGCGCATTTGTGGGATAACAGTTGCAAGAAGGAAGGACAAACCAGGAAAGGAAGACAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCTTGCAGCTCTTAAGTATTGGGGACCTTCAACACACATAAACTTCCCGCTTGAAAATTACCAAACTGAACTTGAAGAAATGAAGAACATGAGCAGGCAGGAATATGTTGCCCACTTGAGGAGAAAGAGTAGTGGGTTCTCAAGGGGTGCCTCAATGTACAGAGGGGTCACAAGGCACCACCAACATGGCAGGTGGCAAGCAAGGATAGGGAGAGTTGCTGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCAGCAATCAAATTTCGTGGTGTGAATGCAGTTACCAACTTCGACATATCTAGATACGATGTTGAAAGAATCATAGCCAGCAATACCCTGCTTGCTGGAGATCTAGCAAGGAGAAACAAGAAGGACACTGAACCAAAAACTGAGGCCATTGAGTGCAATGTTGTATCAAGCCCCATCACAAACAGGGAAGAAGTTGAAGCAGTAAACAACAATGAAACTAGTTCAGAGTGGAAGATGGCTTTGTATCAGTCCCCACAACAAGAGTCAAGTAACTGTGACCCCAAAACTCTCAAGTGTGGAAATTATAATAATAGAAATTCTGCTTTCTCTGTGGCCCTACAAGACCTTATTGGGATTGATTCAGTAGGATCTAGCCAAGCCATGCTAGATGACACTACCAAAGTAGGGACTCATTTTTCAAACCCATCCTCTCTGGTGACCAGTTTAAGCAGCTCAAGAGAAGGTAGTCCTGATAAAACTGGTCCCACATTGCTCTTTCCAAAGCCTCCATTGGGATCAAAGGTTCTGAGTCCTATTGCTAATGGTAGTGTTACCTCTTGGTTTCCCTCAGCAGCTTCTGCTCAATTAAGGCCAGCTACTGCTATCTCAATGTCTCACTTGCCAGTTTTTGCTGCATGGAGTGATACCTAG 2094 0.4456 MKSMNDRNTDDGNNHNWLGFSLSPHMKMEVTSSVPPHHSHQDHHHYYHHPHPSNAVPSTNFYHLSPSHLNTSSGICYGIGENSSFHSSSSPLAMMPLKSDGSLCIMEALTRSQTQVIMPMPTSSPKLEDFLGGATLGAQEYGGHEREAMALSLDSIYYSHNAEPQTNREHHSSLDLLSDPFRQVQSHPYYSGLACHGIFQTPLVEETKEPHVTVCSSQMAQVAAEEGIAYFKNWVAPREYSTTQQTLDQQQVNSSIGEDHGGSCSVGVGTVGVGELQSLSLSMSPGSQSSCVTIPSQISSSGTDSVATMTAKKREAPKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIIASNTLLAGDLARRNKKDTEPKTEAIECNVVSSPITNREEVEAVNNNETSSEWKMALYQSPQQESSNCDPKTLKCGNYNNRNSAFSVALQDLIGIDSVGSSQAMLDDTTKVGTHFSNPSSLVTSLSSSREGSPDKTGPTLLFPKPPLGSKVLSPIANGSVTSWFPSAASAQLRPATAISMSHLPVFAAWSDT. 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03505 697 CDD AP2 338 402 IPR001471 GO:0003700|GO:0006355
Seca8g03505 697 CDD AP2 437 498 IPR001471 GO:0003700|GO:0006355
Seca8g03505 697 MobiDBLite consensus disorder prediction 29 52 - -
Seca8g03505 697 ProSiteProfiles AP2/ERF domain profile. 438 496 IPR001471 GO:0003700|GO:0006355
Seca8g03505 697 FunFam AP2-like ethylene-responsive transcription factor ANT 338 404 - -
Seca8g03505 697 SMART rav1_2 339 408 IPR001471 GO:0003700|GO:0006355
Seca8g03505 697 SMART rav1_2 438 502 IPR001471 GO:0003700|GO:0006355
Seca8g03505 697 FunFam AP2-like ethylene-responsive transcription factor 437 498 - -
Seca8g03505 697 ProSiteProfiles AP2/ERF domain profile. 339 402 IPR001471 GO:0003700|GO:0006355
Seca8g03505 697 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 121 565 - -
Seca8g03505 697 SUPERFAMILY DNA-binding domain 338 404 IPR016177 GO:0003677
Seca8g03505 697 Pfam AP2 domain 339 394 IPR001471 GO:0003700|GO:0006355
Seca8g03505 697 Pfam AP2 domain 439 488 IPR001471 GO:0003700|GO:0006355
Seca8g03505 697 SUPERFAMILY DNA-binding domain 437 498 IPR016177 GO:0003677
Seca8g03505 697 PRINTS Ethylene responsive element binding protein signature 478 498 IPR001471 GO:0003700|GO:0006355
Seca8g03505 697 PRINTS Ethylene responsive element binding protein signature 340 351 IPR001471 GO:0003700|GO:0006355
Seca8g03505 697 Gene3D AP2/ERF domain 438 498 IPR036955 GO:0003700|GO:0006355
Seca8g03505 697 Gene3D AP2/ERF domain 338 404 IPR036955 GO:0003700|GO:0006355
Seca8g03505 697 MobiDBLite consensus disorder prediction 626 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03505 Seca-Chr8 100948088 100951983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03505 1 544 AP2-EREBP Transcription Factor Family AT4G37750 48.185 5.23e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca8g03505 AP2 4.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03505 K09285 - gmx:100798179 989.564