Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03504 ATGGGGGTTCAGGAAAATGCCATGGGGTTTCAACATGGAAATGAGAGCATTCTGACTTGTCAATCATCTGGTTTGAGTGCAAATGTTTCAGAAATGGCCATTAGTTCTGTGTCTATGGCTAAGCCTTCAGAAGTACCTAATCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCTTCAATGGTTTCTCATAGTGAATTTGCCAATGCCAATTCATCTTACCCTCTTGTTTTGGAGAATCAGGGAATGAGCACCAACTCTCACCTAGTTCAATACATGTCTGATTCAACAAATCTTGGGGGTATGGTTCACAAGGTTCCTTCTTATGGAAGTGGGAGCTTCTCTGAAATTGTTGGCTCATTTGGTCAACATGGGTCTGGTGATATTGCTAACACAGGGTATCCACCTCATTATAATCCCATCAAGGATGCTGGAATTGAAAGGGGTCCAATGAATGGTGAACAATCTCAGGTTGAAGACTCAAATCCTGAAGAGGGAGCCACAGGATCTGCACCTGGTGGAAATAGAAGAAAGAGAGGGCTTGATCAAAATTCTACTTTTAGTCCAAACAAGAATGCTGAGGGTGATGTGCTGAAAGATTCTCCTAGGAAGATCTCTGATGGTCCAAAAGAACATGAAAAGAAACAAAAAGTTGATCAGAATGCTAGTGTTGATTTGCGTGGTAAGCAATCTGGGAAGCAAGCTAAAGAAAGCTCTCAGAGTGGAGATGCTCCTAAAGAAAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACAAACAGCCACAGCCTTGCAGAAAGGGTGAGAAGAGAAAAGATTAGTGAGAGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGTAAAGCTGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAATTTTGATGTAGAACGGATCCTATCCAAGGATATTCTGCAGTCACGCATAGGACATGGAATAGGTGGATATGGTCCAGGTATCAGTTCCTCTCATCAATTCACCAATGGAAGTTTCCAGGGAACTCTTGCAGGCATGCCTAGTTCATCAACACAATACCCTCCTTTGCCCCAGACTGTTATGGACCACGAGTTCCAAAGCTTCTATGGAATGGGATATGATTCCAATACAGCACTTGATAATTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 1290 0.4271 MGVQENAMGFQHGNESILTCQSSGLSANVSEMAISSVSMAKPSEVPNPFLASSAWDPLVSLSQAQTFGGSSMVSHSEFANANSSYPLVLENQGMSTNSHLVQYMSDSTNLGGMVHKVPSYGSGSFSEIVGSFGQHGSGDIANTGYPPHYNPIKDAGIERGPMNGEQSQVEDSNPEEGATGSAPGGNRRKRGLDQNSTFSPNKNAEGDVLKDSPRKISDGPKEHEKKQKVDQNASVDLRGKQSGKQAKESSQSGDAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKDILQSRIGHGIGGYGPGISSSHQFTNGSFQGTLAGMPSSSTQYPPLPQTVMDHEFQSFYGMGYDSNTALDNLGPNGRLKTEL. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03504 429 FunFam Basic helix-loop-helix transcription factor 266 338 - -
Seca8g03504 429 Gene3D - 266 340 IPR036638 GO:0046983
Seca8g03504 429 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 176 381 IPR024097 GO:0006355
Seca8g03504 429 MobiDBLite consensus disorder prediction 139 259 - -
Seca8g03504 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Seca8g03504 429 MobiDBLite consensus disorder prediction 207 233 - -
Seca8g03504 429 CDD bHLH_AtBPE_like 259 344 - -
Seca8g03504 429 MobiDBLite consensus disorder prediction 234 256 - -
Seca8g03504 429 Pfam Helix-loop-helix DNA-binding domain 272 320 IPR011598 GO:0046983
Seca8g03504 429 SMART finulus 275 325 IPR011598 GO:0046983
Seca8g03504 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 337 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03504 Seca-Chr8 100882889 100886827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03504 8 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 43.560 2.27e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g03504 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03504 - - gmx:100801930 684.1