Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03492 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAAAAAGGCCCATGGTCTCCAGAAGAAGATGCTAAACTCAAGTCCTACATCGAACAACATGGCACCGGCGGTAACTGGATTGCTTTGCCCCAAAAAATCGGTTTTGTTTTTGAATTAGGACTGAAACGCTGTGGCAAGAGTTGCCGTCTTAGGTGGCTAAATTATCTCCGCCCTAATCTCAAACACGGTGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTTTACGTTAGTATTGGAAGCAGGTGGTCGGTGATTGCAGCTCAATTGCCAGGAAGAACGGATAATGACATAAAGAACTACTGGAACACAAGGCTGAAAAAGAAGCTTCTTGGGAAGCACCGTAATAATAAAGAACAACGCAATAGAGGCAATAATAAGCAAGAAAGGGATAATAGAGGGAGCTTTGGTGGTGAATATTCCTTGTCCTTAATTCCGGAAAATAGTACTACTACTCAACAACAGCCATATTGGCCACATGTACCTGTTTTATCATCATCACCATTACCATTACCACCGTTGCCATATACAAACCACCAAGGTCCTTCTTTCAATGACCAGGATTCTATTAAGAAACTGCTTATGAAGCTTGGAGGGAGATTTTCCGATGACTATCATCCCACCGTTAATAATAATAGTCTTCAATTCTCAGATGGGACCCACTCCTCCTCCACGGAACAGATTTATCATGTGGGCTCTTCTTCTAATAATGAAGTACAATTTGGTCAATACTGTGGAGAGGGACTTGCCTTGGTGCAAGGACAAGGAAGTTGCTTCACCTCATCATCAGCAATTGAGGAAATGGTGGTGTCTACTAATTATGCACAGAGATATGATGGGTTGGAGTTTCTCTATGGAGAGGACATGATTGAAGGTAAGATAATAGGATCTACTACTTGTGGCCAAAATGCTAGTAACTGGGGTGAAATTACTAGTACTCAGATTTATCATCCTCTTGCTTCCAATTACCAAGGTTGA 1017 0.4228 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGFVFELGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRNNKEQRNRGNNKQERDNRGSFGGEYSLSLIPENSTTTQQQPYWPHVPVLSSSPLPLPPLPYTNHQGPSFNDQDSIKKLLMKLGGRFSDDYHPTVNNNSLQFSDGTHSSSTEQIYHVGSSSNNEVQFGQYCGEGLALVQGQGSCFTSSSAIEEMVVSTNYAQRYDGLEFLYGEDMIEGKIIGSTTCGQNASNWGEITSTQIYHPLASNYQG. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03492 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 68 IPR017930 -
Seca8g03492 338 Pfam Myb-like DNA-binding domain 75 117 IPR001005 -
Seca8g03492 338 Pfam Myb-like DNA-binding domain 14 68 IPR001005 -
Seca8g03492 338 SUPERFAMILY Homeodomain-like 11 115 IPR009057 -
Seca8g03492 338 Gene3D - 76 148 - -
Seca8g03492 338 Gene3D - 7 74 - -
Seca8g03492 338 MobiDBLite consensus disorder prediction 130 147 - -
Seca8g03492 338 SMART sant 13 70 IPR001005 -
Seca8g03492 338 SMART sant 73 121 IPR001005 -
Seca8g03492 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Seca8g03492 338 PANTHER OS09G0431300 PROTEIN 1 268 - -
Seca8g03492 338 ProSiteProfiles Myb-like domain profile. 9 68 IPR001005 -
Seca8g03492 338 CDD SANT 77 119 IPR001005 -
Seca8g03492 338 MobiDBLite consensus disorder prediction 125 154 - -
Seca8g03492 338 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Seca8g03492 338 FunFam Transcription factor MYB36 76 146 - -
Seca8g03492 338 CDD SANT 16 68 IPR001005 -
Seca8g03492 338 FunFam Transcription factor RAX3 7 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03492 Seca-Chr8 100406191 100407985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03492 1 216 MYB Transcription Factor Family AT3G49690 60.369 5.53e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g03492 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03492 K09422 - gmx:100800290 414.846