Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03491 ATGGGTTTTGATGGGCTTCAACTTGGTCTTGGACTAGGCCTCAATGATCAATCAGAGGATTATTGCATCAAGATTGATGATCAAAGGCAGAGAGAAAGCCAGAAGAAAAAGATGGAGAATCAATCAAAATGTCATAATAAGGCATATCCATCACTTACGTTAGGACCACCACAAGAGGAAGAAGTAAATGATCAAACTTTATTAGCTTCAAAGACTGAATCCTATGAATATTTCCGTCCCCAACAAGTTTTTTCTCCTAGCGCAGAGTCTTCATTTTCCAACTCATCAAGCATCAAGAGGGAGCGAGATCAAGTTCTTGGTGGAGAGGAATTTGAGGTAGAGGTAGAGGTAGAGAAGGTTCCAATAAGGGTAGGTGGTGGTGATGTTGATGAAGATGGTAATCCCAGGAAGAAACTCAGGCTAACCAAAGAACAATCTGCAGTCTTGGAAGAAAACTTCAGAGAGCATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAAGAAAGCTGAATTTGCGGGCGAGACAAGTAGAGGTGTGGTTTCAAAACAGGAGAGCCAGGACAAAACTGAAACAAACGGAGTCAGAGTGTGAACTACTAAAGAAGTGTTACGAAACTCTGACGGAGGAGAACAAGAAGTTACAAAAGGAGTTGCAAGAACTTAAGTCAATGTCAATGCAAACAACGCCAGCACCTTTTTACATGCAGATTCCAGCAGCCACACTTACCATATGCCAATCCTGTGAGAGAATTTGCGGTGGTAATAGTAATGGATCCTCACCCACGACAACGTTACTTATTGGCTCAAAGGCCCATCATCATCACTTTTATACAAATAATAACTATCCATTTCCCCACTCATCATCTGCAGCATGTTAG 882 0.4172 MGFDGLQLGLGLGLNDQSEDYCIKIDDQRQRESQKKKMENQSKCHNKAYPSLTLGPPQEEEVNDQTLLASKTESYEYFRPQQVFSPSAESSFSNSSSIKRERDQVLGGEEFEVEVEVEKVPIRVGGGDVDEDGNPRKKLRLTKEQSAVLEENFREHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTESECELLKKCYETLTEENKKLQKELQELKSMSMQTTPAPFYMQIPAATLTICQSCERICGGNSNGSSPTTTLLIGSKAHHHHFYTNNNYPFPHSSSAAC. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03491 293 FunFam Homeobox-leucine zipper protein 18 122 197 - -
Seca8g03491 293 Pfam Homeobox associated leucine zipper 192 225 IPR003106 GO:0006355|GO:0043565
Seca8g03491 293 MobiDBLite consensus disorder prediction 26 43 - -
Seca8g03491 293 SMART halz 192 238 IPR003106 GO:0006355|GO:0043565
Seca8g03491 293 CDD homeodomain 135 193 IPR001356 GO:0003677
Seca8g03491 293 Gene3D - 140 190 - -
Seca8g03491 293 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Seca8g03491 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 29 263 - -
Seca8g03491 293 SMART HOX_1 134 196 IPR001356 GO:0003677
Seca8g03491 293 MobiDBLite consensus disorder prediction 26 66 - -
Seca8g03491 293 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Seca8g03491 293 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Seca8g03491 293 SUPERFAMILY Homeodomain-like 133 200 IPR009057 -
Seca8g03491 293 Coils Coil 184 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03491 Seca-Chr8 100220238 100222956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03491 98 252 Homeobox Transcription Factor Family AT4G37790 64.968 1.18e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca8g03491 Homeodomain 8.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03491 K09338 - gmx:100797650 373.244