LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g03490	ATGGAGGAATACACTAATAATCATCCAAGTCCAAGTCCAAGGCCAAATTTCTTGTACTCCTCTGGAAACCAAAACCAAAACCATCAGCATCTTCAGTTTCCAATCAACACCTTTAATCTTCAATCAGGTGGATCAGATCACTGCTTTCAATCGGATCAAGCATCACCACATCACCCTGCTGTGAAAACCGAAGCAAGCACCTCGCAGCTTCATACTCCGATTTTCCATTACCCTTTAATGAGAGGAAATCTTGTTATGCATCCTCCTCAACAAGGAGGAGGAGGGAGTCCAAGCTCTAGTGAAGCTGAAGCTATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTTTTAGAAGCCTACATGGATTGCCAAAAGATAGGAGCTCCACCGGAAGTGGTGGCGCGTTTGGTTGCTGCAGGGCAAGAGTTTGAAGCAAGGCAACGATCTTCAGTTAGCTCCAGAGAAACTTCCAAGGATCCAGAACTTGACCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAAGCGATGGATTTCATGAGGAGGATAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTTCGGATCTTCTCTGGTACTTACTTACTTTATCTTTCTTTCTTTCTCTATGATAAATGTGAAGGTGCTGGTTCATCAGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAACTGCCCGAGATTGATCCCCGAGCAGAAGACCGTGAACTCAAAAACCACTTGCTGAGGAAATACAGTGGTTACCTAAGTAGCCTTAAGCAAGAACTTTCCAAGAAAAAAAAGAAAGGAAAACTGCCTAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATACCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCACAGAACGCATCTCTTTATATGGATGGTCACTACATGGCTGATGGTCACTACCGTCTAGGACCATAA	1128	0.4282	MEEYTNNHPSPSPRPNFLYSSGNQNQNHQHLQFPINTFNLQSGGSDHCFQSDQASPHHPAVKTEASTSQLHTPIFHYPLMRGNLVMHPPQQGGGGSPSSSEAEAIKAKIIAHPQYSSLLEAYMDCQKIGAPPEVVARLVAAGQEFEARQRSSVSSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSGTYLLYLSFFLYDKCEGAGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNASLYMDGHYMADGHYRLGP.	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g03490	375	ProSiteProfiles	'Homeobox' domain profile.	277	340	IPR001356	GO:0003677
	Seca8g03490	375	SMART	KNOX1_2	103	147	IPR005540	GO:0003677\|GO:0005634
	Seca8g03490	375	SMART	KNOX2_2	154	205	IPR005541	GO:0003677\|GO:0005634
	Seca8g03490	375	Pfam	KNOX2 domain	158	204	IPR005541	GO:0003677\|GO:0005634
	Seca8g03490	375	SUPERFAMILY	Homeodomain-like	278	352	IPR009057	-
	Seca8g03490	375	ProSitePatterns	'Homeobox' domain signature.	315	338	IPR017970	GO:0000981\|GO:0006355
	Seca8g03490	375	Pfam	KNOX1 domain	104	146	IPR005540	GO:0003677\|GO:0005634
	Seca8g03490	375	CDD	homeodomain	289	341	IPR001356	GO:0003677
	Seca8g03490	375	ProSiteProfiles	ELK domain profile.	257	277	IPR005539	GO:0003677
	Seca8g03490	375	MobiDBLite	consensus disorder prediction	1	26	-	-
	Seca8g03490	375	Gene3D	-	282	344	-	-
	Seca8g03490	375	SMART	HOX_1	279	344	IPR001356	GO:0003677
	Seca8g03490	375	Pfam	ELK domain	257	278	IPR005539	GO:0003677
	Seca8g03490	375	Pfam	Homeobox KN domain	297	336	IPR008422	GO:0003677\|GO:0006355
	Seca8g03490	375	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	51	347	-	-
	Seca8g03490	375	MobiDBLite	consensus disorder prediction	232	254	-	-
	Seca8g03490	375	FunFam	Homeobox protein knotted-1-like 2	282	344	-	-
	Seca8g03490	375	MobiDBLite	consensus disorder prediction	48	67	-	-
	Seca8g03490	375	SMART	ELK_2	257	278	IPR005539	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g03490	Seca-Chr8	100109964	100115879	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g03490	45	375	Homeobox Transcription Factor Family	AT4G08150	69.912	9.07e-153	434

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Seca8g03490		KNOX2	2.8e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g03490	-		-	gmx:100807602	614.379