Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03477 ATGGGAGTTGTGTATAAGGTAACAATTCCAAATGGTCACACACTAGCGGTCAAAAGGATATGGTCATCAACAGAGTCTGGAGCATTTAGTTCTGAAATTCAAACACTAGGTTCAATCAAACACAAGAATATCATCAAGCAAAGGTTGGGGATCCAGTCTTGGTATCATCCTCATCTTGCTGACTTTGGTCTTGCAAGAATTGAAAGTGAAAATGGTGATAATACTAATTCCAAGCCAATTCAAAGACCCCACCTTGCTGGTTCCTATGGATACATGGCTCCTGAACATGCTTTAATGCAACAGATCAGTGGCAAAAGTGATGTGTACAATTTTGGCGTGGTCCTACTTGAGGTCCTAACAGGAAGGCACCCATTAGACCCAACTCTACTAGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCCAGCAAAGGAGACCCATTTGATATTCTTGACCCAAAGCTGAGAGGAAGGACTGACTCTACTATGCATGAAATGCTACAAACTCTAGCTGTGTCATTTCTATGTGTCAGTACCAAAGTTGTGAAGACATAA 561 0.4242 MGVVYKVTIPNGHTLAVKRIWSSTESGAFSSEIQTLGSIKHKNIIKQRLGIQSWYHPHLADFGLARIESENGDNTNSKPIQRPHLAGSYGYMAPEHALMQQISGKSDVYNFGVVLLEVLTGRHPLDPTLLGGAHLVQWVRNHLASKGDPFDILDPKLRGRTDSTMHEMLQTLAVSFLCVSTKVVKT. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03477 186 SMART serkin_6 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03477 186 ProSiteProfiles Protein kinase domain profile. 1 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03477 186 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 46 - -
Seca8g03477 186 Pfam Protein kinase domain 57 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03477 186 Gene3D Transferase(Phosphotransferase) domain 1 51 177 - -
Seca8g03477 186 Gene3D Phosphorylase Kinase; domain 1 1 50 - -
Seca8g03477 186 SUPERFAMILY Protein kinase-like (PK-like) 1 153 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03477 Seca-Chr8 99618025 99619029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03477 2 46 Receptor kinase-like Gene Family AT5G56040 68.889 4.19e-15 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g03477 Pkinase 8.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03477 - - gmx:100813139 229.95