Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03455 ATGGGTACCTGCATATCCGTTGCATCCCCAGAGATTCATGGGGTCCCTGAAGAAGTTCATGATGAGAATGTGATAATATTTGAACCAAGCAAGGTCCTAAATGGGAGTAAGAGACTTTGCTCTGTTTACTCTAAACAAGGTAGCAAAGGACTCAATCAAGATGCTGCCTCTCTTCACAAGGGTTATGGGATGGAAAATGGAACATTTTGTGGTGTCTATGATGGACATGGATGGAATGGACACATAGTGAGCAAACTAGTAAACAGTCGTTTGCCTTCTCTTATACTGAGCCAAAAGAGTGCTTTTGCAGAGTTTGATAAGATAGAAAATGGTTATTACAACACCCCAAACTATATTGGCACAGCAGAAGATGACTTGGCTTCAGAGAATTTTCATAAATGGAAAAAAGCCATTATTAGTGCTTTCAGGGTGATGGACAAGGAGGTGAAACTACAAAAGAATCTAGACTGTTCTTGCAGTGGAACTACTGCTGTAATTGTCATTAGACAGGATGAAGGTCTTATCATAGCTAATCTGGGTGACTCCAGAGCAGTCTTGGGGACAATCCATGATGAAAAACTCCAAGCCATTCAATTGACCACTGATTTGAAACCTGAATTACCTCGTAAGACTCTTCTTATAAACTACAGTTGTATACAGCTTCTTTTTCTTGTTTTTTTTAATCCACTTCCTATCACTATTATTCACGAGGACTAA 717 0.3947 MGTCISVASPEIHGVPEEVHDENVIIFEPSKVLNGSKRLCSVYSKQGSKGLNQDAASLHKGYGMENGTFCGVYDGHGWNGHIVSKLVNSRLPSLILSQKSAFAEFDKIENGYYNTPNYIGTAEDDLASENFHKWKKAIISAFRVMDKEVKLQKNLDCSCSGTTAVIVIRQDEGLIIANLGDSRAVLGTIHDEKLQAIQLTTDLKPELPRKTLLINYSCIQLLFLVFFNPLPITIIHED. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03455 238 PANTHER PROTEIN PHOSPHATASE 40 206 IPR015655 GO:0004722|GO:0006470
Seca8g03455 238 SUPERFAMILY PP2C-like 29 209 IPR036457 -
Seca8g03455 238 CDD PP2Cc 38 209 IPR001932 -
Seca8g03455 238 Gene3D - 22 217 IPR036457 -
Seca8g03455 238 ProSiteProfiles PPM-type phosphatase domain profile. 39 238 IPR001932 -
Seca8g03455 238 SMART PP2C_4 29 221 IPR001932 -
Seca8g03455 238 Pfam Protein phosphatase 2C 65 208 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03455 Seca-Chr8 99044332 99046173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03455 1 229 PP2C-type Phosphatase Gene Family AT5G26010 41.702 2.81e-47 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03455 - - lja:Lj5g3v0380040.1 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03455 8 99044332 99046173 Seca8g03455 8 99044332 99046173 ECH
Seca8g02514 8 55748326 55757792 Seca8g03455 8 99044332 99046173 PCT