Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03447 ATGGCAATGGAGAATGATATATACTGTGCTCCACTGGACATGGCTGGCCGAAATTCTATTGTCATAGAAGATATTACTCAGCATCTCACACCAAAGCCACTCATTTATTGCTATTCATTTGACCTCAATAACCAAAACCACATGATAAATGGAATTCCAATACTTGCTGGAGAGCAAGGTGAACCTGTAAGAAGTGACCAGGTAGATGGTCACTTCACAAATCTTGCTAATTCTAATTCATTTGTTGCATCATCACAAGGAAAGACTATTGTGGGAGATGCCTCAAATCCTATTGACAACACTAACTTTCAAGAGCATTTAGCTGGAGGAAGGTCAATTCCTTCAGCTTCACTTCCTGCTAGAATTGGTCTTCAAGAAAATTTAGAAAATTCAGCAGCTTTGTCTCCTTCAGTGTATTCATTGGAGGCATTGGGGCCATATATCTTCAATAATTGGCAAGATGCCTCAAACCCTTTGTCTGCAACTTTTGGTGAGAGTGGCTATGAGGAAGTACCCAGTAATGGTAGGTGGAATGTCAACAAATATCTGAAAGCCCCAGAGGTTGATGGGACTGGGTTGCTGTCTTATTCATCCATAGGAAACCTGGATCCACATGGATGGACATCATCTAATGTTGCAAACTTGGCTAATCTTGCTTACAGTTCCTCTAAGTGTAGTAATGAGCCATCACTAAGTCTTGCAACATCACCAACCACTGGTCAGTGCTCAGAGATGAGCTGCTCTGACTTAACCCATAGTACAAATGGAACAAGATCAGGGTTGGAGCAAGCCTCCTGCAGCAGTATGGAACTTTCTATGAGTTTAGGTTCTAATAAAAATGTTAAGTTTTCACCAGCAATCCTGGGATCAAGATACCTTGCTGGAATTCAGGAGATACTTGTTCAAATTGCAACATATTCATTTCAAAATCTTAAAGAGATAAATCATTCATCTGGTAGTGTTAGAGAAGGAGGAAATAAATCAACTTCAGCTTTCACATCCAAGAGAAGAACAGCAATGCATCACAGTTCAAATTCTATGTTTGAAGCACATGCAGAATCTCCATTGCATAAACACGCTTCTGAATCAAGCAAATCCCAACTGCTGATGCTTCTACAGCTGGTAGACAATCAATATAGTCAGTGTCTGGATGAGATTCATACTGTTGTATCTGCATTCCATGCTGCTACTGAGCTAGACCCACACATACATACACATTTTGCTCTTCAAACAATCTCTATCCTATACAAGGACTTGAGAGAGAGAATTAGCAATCATATTCTTGCCATGGGATCCAATTTTAACAGCTCATGCTCAGAAGAAGAGAATGAATGGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAACAGTTGAAAAGAAAAGATCAGTTATGGAGGCCCCAGAGGGGCTTGCCAGAAAGATCTGTCTCAGTTCTACGTGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCCAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGCTGACAAGAAGTCAGGTATCCAACTGGTTTATAAATGCAAGAGTTAGGCTATGGAAACCTATGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTCGAAATGAAGAAGGAAAGGAGAACTGTCATAGAAGCAGGATAAGCATGAACAATCAAATGTTTAATATCAATTGA 1704 0.4002 MAMENDIYCAPLDMAGRNSIVIEDITQHLTPKPLIYCYSFDLNNQNHMINGIPILAGEQGEPVRSDQVDGHFTNLANSNSFVASSQGKTIVGDASNPIDNTNFQEHLAGGRSIPSASLPARIGLQENLENSAALSPSVYSLEALGPYIFNNWQDASNPLSATFGESGYEEVPSNGRWNVNKYLKAPEVDGTGLLSYSSIGNLDPHGWTSSNVANLANLAYSSSKCSNEPSLSLATSPTTGQCSEMSCSDLTHSTNGTRSGLEQASCSSMELSMSLGSNKNVKFSPAILGSRYLAGIQEILVQIATYSFQNLKEINHSSGSVREGGNKSTSAFTSKRRTAMHHSSNSMFEAHAESPLHKHASESSKSQLLMLLQLVDNQYSQCLDEIHTVVSAFHAATELDPHIHTHFALQTISILYKDLRERISNHILAMGSNFNSSCSEEENEWSVETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKACRNEEGKENCHRSRISMNNQMFNIN. 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03447 567 Pfam Homeobox KN domain 485 524 IPR008422 GO:0003677|GO:0006355
Seca8g03447 567 ProSiteProfiles 'Homeobox' domain profile. 465 528 IPR001356 GO:0003677
Seca8g03447 567 SMART HOX_1 468 532 IPR001356 GO:0003677
Seca8g03447 567 SMART prehox3 281 425 IPR006563 -
Seca8g03447 567 MobiDBLite consensus disorder prediction 317 345 - -
Seca8g03447 567 CDD homeodomain 468 529 IPR001356 GO:0003677
Seca8g03447 567 Pfam Associated with HOX 287 424 IPR006563 -
Seca8g03447 567 Gene3D - 471 550 - -
Seca8g03447 567 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 236 542 - -
Seca8g03447 567 SUPERFAMILY Homeodomain-like 470 537 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03447 Seca-Chr8 98907454 98909994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03447 222 541 Homeobox Transcription Factor Family AT4G32980 56.135 7.49e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca8g03447 POX 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03447 - - gmx:100812648 817.764