Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03430 ATGCCCAAAATGAAGCATCTACTCAGAAAGCTTCACATCGGTGGTGGAGCTGCCACTATTAATCACAATCACACTCACAACACATTGCCTCACTCTCACACTCCTCCCTCTTCTTCCGCTCTCCCATCGCCGCCCACTCCATCGCCAACCGTCGTTCCCAATCGGAACCCTTTCGTTGACGCCCAAAACGACAGCGCCGGCAGAACCAACAACAACAGCAACGGTGTCGTCGACTTCAATCTCTTGGAGGAAGAAGAGTTTCAGGTGCAGTTGGCTCTTGCAATCAGCGCTTCCGATCTTGATCCCCACCACGACCCCGCCGAATCCGCACAGATCGATGCCGCCAAACAGATCAGCCTCGGCTATTCGGCTTCTCTCACTGACACCCAAGCCCTCGCTCAGTTTCAATCCCTTCGTTACCGGATAATCAGAATCACACTGGGAGTTATGGGTAATATTCATGTATCATGTGTCCGTTTCTTATTTAGGAACTACAATGTCATTAATTATGACGAGAAAGTGATGGATGGGTTTTATGATGTTTATGGGATCACCTCAAATTTGAGTGAACGAGGAAAGATGCCGTTGTTGGTGGATCTACAAAGTACTCATATCTCACGAAATGTTGATTGTGAAGTGATTTTGGTGAATCGCGCAGTTGATAATGAGCTGAATCAGCTTGAGAAAAAAGCATATAATTTGTTCAATGAGTGTCGGGTTTCTGAACTAGGACTAATTTTGAGTGGCTTACTTCAGAAACTTGCTGATGTTGTTGCTAATAGAATGGGTGGACCAGTTGGTAATGCTGATAAAATTGTGAAAAGGTGGGATGTGAGGAGTCGTGAGTTACGAGATTCTTTAAGAACCATTGTCCTCCCCCTTGGCTCTCTTGATGTTGGACTTTCGCGTCACCGTGCCCTACTTTTTAAGGTACTTGCTGACAGGATTAATATTCCCTGTATGCTAGTTAAAGGGAGCTATTACACAGGATCTGATGATGGAGCCGTGAATTTGATCAAAGCTGATGATGGATGTGAATACATTGTTGATATGATGGGTGCTCCCGGAACTCTTATTCCTGCTGAGGTACCCAGCAGTCAGCTCCAAAACGATGGTTTTGCTGTTAGAGGTTGTGCAGAGATTATAGGACTACCTAACAACACAAATTTGATACTTGATGATGGAACTGGTGTGCCAGGAATCTTGTCTGATCGTGTTAGAATTTCAACAATGGGACAGGTCCAGACAGAAGAATTATTAGACATGGGCTGTCATCAAACAAAACCAGATGAAATAAATCGGGTTAAAGTAAATGAAACAGGGGGATTTGAACATAAAGAAGCACATGGAGACTCATCACATACAGAATCATCACCTGCAAAAAATATGCATGTGAAAAATGTCTCCAAGTATGCTCTTGTTGCAGGAAAGAACCCAGAATTTGCCCCAGAACTGCACACTGTTAAATTAGAGAGCGGTGCATCACCTCCTCCTGATCTTTTTTCAGATATAAATCCCAAAGATTGGAGTGTAGATAAAGTAAATGAAAAAAATGTTGATACCATTCAAGCTGACCCAAATAGGCTGTTATTAAGCTATAAGAAGTCTGTCATACCCTTTCAAGGGATAGGCTCTGCCAGCAATACTAGGTTTTGTCAATCTACTGACCGGTTATCTGAACAGCAAGAAGAATTGCATACAGATGCCATTGAATTTTATGATTCTTCACAGAGTGATAATACACGGAATGGGTTTGCAACTGTTTCTGGTAGAAATAATGATTTAGAGAAACCCAATCCATTATTTATTGGTTCAATTTCTATCAATACACATAAGGGATGTAAAGAAAAGTGTCTTGATTCTTCCTTGCCCAATGAAAATGGTCTTAGAAATAAGATTGGAGCTTCTTTTAATAACATTGAATCAGGGAAAGATTCAGCCATTCAAATAAATGAGACTGTCAATGGAGATTGCATTCTATATGATGGTAAAGGTGAGAAGGTCAACTCAGTACTTGGTGAAGGCACGGAATGGGAAATTCAATGGGAGGATCTTCGTATTGGTGAGCGTATTGGTATTGGTTCTTATGGTGAAGTTTACCGTGCTGATTGCAATGGCACCGAAGTGGCTGTAAAGAAGTTTCTAGACCAAGACTTCTCTGGTGATGCATTAGCTCAGTTCAAATCTGAAGTTGAGATCATGTTAAGGCTGCGGCATCCTAATGTTGTGCTCTTCATGGGAGCAATTACTCGTCCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAGAGGCAGTTTATATAGGATATTGCATCGTCCTAATCTTGTACTTGATGAGAAGCGACGGTTGCGTATGGCTCTTGATGTGGCTAAGGGAATGAATTACTTGCACACCAGCCATCCTCCCATTGTCCATCGAGATTTGAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGTTGTAAAGGTCTGTGATTTTGGTCTGTCACGTATGAAGCACCATACATTTTTGTCATCGAAGTCTTGTGCTGGAACGCCTGAGTGGATGGCACCAGAAGTCTTGAGAAATGAGCCAGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATCTTGTGGGAGTTGACTACCACAAGTATCCCATGGAAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGGCTTGAAATTCCAGAAGATGTGGATCCAGTAGTAGCACAAATAATACGTGATTGCTGGCAAACGGAGCCACACTTGCGGCCATCATTCTCACAGCTGATGTCTCGTCTTTACCGTCTTCAACGTCTGGTTGTCCGTAAAACGGGCTCAACACATTAA 2859 0.4278 MPKMKHLLRKLHIGGGAATINHNHTHNTLPHSHTPPSSSALPSPPTPSPTVVPNRNPFVDAQNDSAGRTNNNSNGVVDFNLLEEEEFQVQLALAISASDLDPHHDPAESAQIDAAKQISLGYSASLTDTQALAQFQSLRYRIIRITLGVMGNIHVSCVRFLFRNYNVINYDEKVMDGFYDVYGITSNLSERGKMPLLVDLQSTHISRNVDCEVILVNRAVDNELNQLEKKAYNLFNECRVSELGLILSGLLQKLADVVANRMGGPVGNADKIVKRWDVRSRELRDSLRTIVLPLGSLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGSDDGAVNLIKADDGCEYIVDMMGAPGTLIPAEVPSSQLQNDGFAVRGCAEIIGLPNNTNLILDDGTGVPGILSDRVRISTMGQVQTEELLDMGCHQTKPDEINRVKVNETGGFEHKEAHGDSSHTESSPAKNMHVKNVSKYALVAGKNPEFAPELHTVKLESGASPPPDLFSDINPKDWSVDKVNEKNVDTIQADPNRLLLSYKKSVIPFQGIGSASNTRFCQSTDRLSEQQEELHTDAIEFYDSSQSDNTRNGFATVSGRNNDLEKPNPLFIGSISINTHKGCKEKCLDSSLPNENGLRNKIGASFNNIESGKDSAIQINETVNGDCILYDGKGEKVNSVLGEGTEWEIQWEDLRIGERIGIGSYGEVYRADCNGTEVAVKKFLDQDFSGDALAQFKSEVEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYRILHRPNLVLDEKRRLRMALDVAKGMNYLHTSHPPIVHRDLKSPNLLVDRHWVVKVCDFGLSRMKHHTFLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTTSIPWKGLNPMQVVGAVGFQNKRLEIPEDVDPVVAQIIRDCWQTEPHLRPSFSQLMSRLYRLQRLVVRKTGSTH. 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03430 952 Pfam Protein tyrosine and serine/threonine kinase 685 937 IPR001245 GO:0004672|GO:0006468
Seca8g03430 952 PRINTS Tyrosine kinase catalytic domain signature 908 930 IPR001245 GO:0004672|GO:0006468
Seca8g03430 952 PRINTS Tyrosine kinase catalytic domain signature 864 886 IPR001245 GO:0004672|GO:0006468
Seca8g03430 952 PRINTS Tyrosine kinase catalytic domain signature 845 855 IPR001245 GO:0004672|GO:0006468
Seca8g03430 952 PRINTS Tyrosine kinase catalytic domain signature 759 772 IPR001245 GO:0004672|GO:0006468
Seca8g03430 952 PRINTS Tyrosine kinase catalytic domain signature 798 816 IPR001245 GO:0004672|GO:0006468
Seca8g03430 952 SUPERFAMILY Protein kinase-like (PK-like) 677 942 IPR011009 -
Seca8g03430 952 CDD STKc_MAP3K-like 691 937 - -
Seca8g03430 952 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 141 948 - -
Seca8g03430 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Seca8g03430 952 ProSitePatterns Protein kinases ATP-binding region signature. 691 713 IPR017441 GO:0005524
Seca8g03430 952 MobiDBLite consensus disorder prediction 18 72 - -
Seca8g03430 952 MobiDBLite consensus disorder prediction 53 72 - -
Seca8g03430 952 FunFam Serine/threonine-protein kinase isoform 1 676 763 - -
Seca8g03430 952 Pfam Ethylene-responsive protein kinase Le-CTR1 162 359 - -
Seca8g03430 952 Coils Coil 217 237 - -
Seca8g03430 952 FunFam Serine/threonine-protein kinase CTR1 764 947 - -
Seca8g03430 952 Gene3D Transferase(Phosphotransferase) domain 1 764 948 - -
Seca8g03430 952 MobiDBLite consensus disorder prediction 37 52 - -
Seca8g03430 952 Gene3D Phosphorylase Kinase; domain 1 678 762 - -
Seca8g03430 952 ProSiteProfiles Protein kinase domain profile. 685 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03430 952 MobiDBLite consensus disorder prediction 20 36 - -
Seca8g03430 952 SMART serkin_6 685 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03430 Seca-Chr8 98517582 98526311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03430 636 951 MAP Kinase Kinase Kinase AT5G11850 77.358 4.81e-175 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca8g03430 PK_Tyr_Ser-Thr 2.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03430 K04424 - gmx:100779137 1340.1