Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03421 ATGACTCCTGTTTCTCTGAACCCACCAGGTCCTTCCTTACAAGGTCAAAACCAACTCTTCATTTCTCCTAATAATCAGGACTGCCGTTCCTTATTTAACATACTTGATCGAAGGCAAACCATAGAGATTGGAGATTTCAGAGAAAATCATCAGGAGGACAATAAGCTGCTGGTATTGCATGATGGATCATCATCAAGCAATTATCAAGTTTGCAACAATTCATCCTTCATTTCATCACCTCAGCCAGTTATGGAAGATCGAAGTAGCGCATGTGACCCTAATTTATCCTTCTCCTCCAAAATGGAGGATCAAGAAGATAGCAAAAATTGTCACGGGTCTGCCAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAAATGATGAGACCGAGTACCACTCCAACAACTACTCATGACAAAGCAATCAACACTACTACTTCTGCTACTCCTCTAAGTCCAAGATTTCAAAATCAAGGGCACGAAAACAGGTACAGCCAAAGAAGCCCTCGTAACAACAACAACAATAGCACCACTACTAGGGTTTGTTCGGATTGTAACACAAGCAGTACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGTCACTTTGCAATGCTTGTGGAATTAGGCAAAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCAAATGGTTTGGCCACTCCTTTAAACAATGCATCATCTACAAAGACGAGAGTGCATCATCATAACAAGGAAAAGAAGCCTCGTATAAACCATTTTGGACAGTTCAAGAATAAGCACAAGGCCACTACTACAACTAGTGCTGCAGGCTCATCTCAGGGTGTGAGGAAGCTTGAATGTTTCAAGGACTTGGCAATAAGTTTGAGGAATAACTCGGGCTTTCAGCAAGTGTTTCCGAGGGATGAAGTAGCTGAGGCGGCGCTGCTTCTGATGGATTTATCTTGTGGTTTTGTTCACTCTTAA 963 0.4278 MTPVSLNPPGPSLQGQNQLFISPNNQDCRSLFNILDRRQTIEIGDFRENHQEDNKLLVLHDGSSSSNYQVCNNSSFISSPQPVMEDRSSACDPNLSFSSKMEDQEDSKNCHGSAKWMSSKMRLMKKMMRPSTTPTTTHDKAINTTTSATPLSPRFQNQGHENRYSQRSPRNNNNNSTTTRVCSDCNTSSTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATPLNNASSTKTRVHHHNKEKKPRINHFGQFKNKHKATTTTSAAGSSQGVRKLECFKDLAISLRNNSGFQQVFPRDEVAEAALLLMDLSCGFVHS. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03421 320 Gene3D - 176 267 IPR013088 GO:0006355|GO:0008270
Seca8g03421 320 ProSitePatterns GATA-type zinc finger domain. 182 207 IPR000679 GO:0006355|GO:0043565
Seca8g03421 320 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 25 320 - -
Seca8g03421 320 MobiDBLite consensus disorder prediction 129 183 - -
Seca8g03421 320 Pfam GATA zinc finger 182 215 IPR000679 GO:0006355|GO:0043565
Seca8g03421 320 ProSiteProfiles GATA-type zinc finger domain profile. 176 212 IPR000679 GO:0006355|GO:0043565
Seca8g03421 320 SMART GATA_3 176 236 IPR000679 GO:0006355|GO:0043565
Seca8g03421 320 CDD ZnF_GATA 181 218 IPR000679 GO:0006355|GO:0043565
Seca8g03421 320 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 177 216 - -
Seca8g03421 320 MobiDBLite consensus disorder prediction 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03421 Seca-Chr8 98211619 98219271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03421 113 319 C2C2-Gata Transcription Factor Family AT4G26150 36.889 1.66e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca8g03421 GATA 7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03421 - - gmx:100780326 353.599