Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03409 ATGAAAACAGGGGAATGTAAATTTGGTCCGTCATGCAAATATCATCATCCACCATTTATGAGCGCACCCAAAGCGAATGTGATCCTTAGTCATGTGGGTCTTCCTTTGCGCCCGATAATAATTACCTTTCAACTCCTTTGTATTTTGGTGCTTCATATTGCTTTATGA 168 0.3988 MKTGECKFGPSCKYHHPPFMSAPKANVILSHVGLPLRPIIITFQLLCILVLHIAL. 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03409 55 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1 18 IPR000571 GO:0046872
Seca8g03409 55 ProSiteProfiles Zinc finger C3H1-type profile. 1 19 IPR000571 GO:0046872
Seca8g03409 55 PANTHER PROTEIN PHOSPHATASE RELATED 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03409 Seca-Chr8 97965826 97965993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03409 1 38 C2H2 Transcription Factor Family AT3G02830 60.526 5.48e-12 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g03409 zf-CCCH 2.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03409 - - gmx:100789405 71.6329