Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03404 ATGATGAAAGGTTTGGTGGTGGATGAAAATATGTCCAATTTGACTTCTGCTTCAAGTGAAATAAGTGCTTCTTCAGGAACCAGGAATGAAAATGGTTCTCTCTATCCTCAATACTCCTCTACTTCAACAAATCAAGAACCACAACCCAAAAAGAAGAGAAGCCTTCCTGGCCACCCAGATCCTGAGGCTGAAGTGATAGCCTTGAGTCCCCAGACACTGTTGGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCATAGGAGAGGGCATAATTTGCCATGGAAGCTAAAGAAAAGAACTAGCAAAGAAATAAGAAAGAAAGTATACGTGTGCCCAGAGGCAACATGCGTTCACCATGACCCATCAAGGGCCCTTGGAGACCTCACTGGAATAAAGAAGCACTTTTTCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAGCGTTATGCAGTTCAATCGGATTGGAAAGCCCACTCCAAAATCTGTGGCACTAGAGAGTATAAATGTGACTGTGGAACCATTTTCTCTAGGAGGGACAGTTTTATCACTCACAGAGCCTTCTGTGATGCTTTAGCACAGGAGAGTGTTAGAGCAATAACAGCAGTCAACCCTCTATTCTCCTCACACACCCAACTCCATAGCCAAGGCCTTCAAACACCATTAGTCAAAAGAGAACAAGACCAGTTCAATTTAAGACCAGAAATTCCATCATGGTTAACTTTCTCACCACCACCACCATTACTCCCAACAACACATTTCAACCAGCCCTTATTAGTCCACCACCATGAAAACCCTAACCCTACTACTTTGCTTCCTCCATCTTTGATTAACTCAAGTACTAGTAGTGCTTCTCCTCACATGTCTGCCACTGCTTTGTTGCAAAAGGCATCACAAATAGGTGTAACAGTAAGCAACAAAACAGCACCATCTCCATCCATGGTTAGGCCCCACTTACAGCAGCAGGGTCATCACGTGCCTGAATGTACAACAACAACAAGAGGAGGAGGAGGAGGGTATAGCTCTTCGTCGTATATGGCTTCATCTTCAACTGTTTCTGGAATGGTCATGCCTTCACGTGAAGAAATAGGGACTGGTGGGTTTGCTTATGGTTTGGCATCTTATGGGAATAAAGCTGCAATCACCTCAGCTTACTTTGAAGATGGTAGTAGTGCTGCCAACACTGAAGAAGCATCTTCTCTTTTCCATGATATGATGGCTAGTACTGTGCCTTCTGCTAGTGGGTTTGAGACCTCACCCTTTGATATGAGGGGGTCAATGTTTAATCCACACAGAGATAATAATAACTTTCAGGAACTTGTTGTTTCAAAATCAACACAATCCCAGTTTAGTAAAAGCAGCAACAACATTAAGGGTTCTGGTGGAGTTGGTGCTAATAATGATGATGAAATGACAAGGGACTTTCTGAGTCTTGGAGCATTTTCTCAAAGAGATTTGTTCAATATGTCTGGGATTGATCCTTTGGGTTCTTCATCATATGGCAAGCAAAAGCATAACCAAGCGCCTTGGCGAGGTTAA 1581 0.4314 MMKGLVVDENMSNLTSASSEISASSGTRNENGSLYPQYSSTSTNQEPQPKKKRSLPGHPDPEAEVIALSPQTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKKRTSKEIRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAQESVRAITAVNPLFSSHTQLHSQGLQTPLVKREQDQFNLRPEIPSWLTFSPPPPLLPTTHFNQPLLVHHHENPNPTTLLPPSLINSSTSSASPHMSATALLQKASQIGVTVSNKTAPSPSMVRPHLQQQGHHVPECTTTTRGGGGGYSSSSYMASSSTVSGMVMPSREEIGTGGFAYGLASYGNKAAITSAYFEDGSSAANTEEASSLFHDMMASTVPSASGFETSPFDMRGSMFNPHRDNNNFQELVVSKSTQSQFSKSSNNIKGSGGVGANNDDEMTRDFLSLGAFSQRDLFNMSGIDPLGSSSYGKQKHNQAPWRG. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03404 526 MobiDBLite consensus disorder prediction 9 50 - -
Seca8g03404 526 MobiDBLite consensus disorder prediction 506 526 - -
Seca8g03404 526 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Seca8g03404 526 Gene3D Classic Zinc Finger 133 212 - -
Seca8g03404 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 502 IPR031140 -
Seca8g03404 526 Gene3D Classic Zinc Finger 59 128 - -
Seca8g03404 526 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
Seca8g03404 526 MobiDBLite consensus disorder prediction 459 482 - -
Seca8g03404 526 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Seca8g03404 526 Pfam Zinc-finger double-stranded RNA-binding 79 101 IPR022755 -
Seca8g03404 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Seca8g03404 526 SMART c2h2final6 155 175 IPR013087 -
Seca8g03404 526 SMART c2h2final6 120 150 IPR013087 -
Seca8g03404 526 SMART c2h2final6 79 101 IPR013087 -
Seca8g03404 526 MobiDBLite consensus disorder prediction 320 355 - -
Seca8g03404 526 MobiDBLite consensus disorder prediction 1 62 - -
Seca8g03404 526 MobiDBLite consensus disorder prediction 459 476 - -
Seca8g03404 526 FunFam protein indeterminate-domain 12-like 58 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03404 Seca-Chr8 97865435 97869161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03404 7 319 IDZ Gene Family AT1G55110 57.267 3.49e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g03404 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03404 K25870 - vvi:100257789 548.51