Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03380 ATGACGAGGTTGGCTTACTTGAATGAACCGGGGGTGTTGTACAATCTTCGCAGAAGATATGCGCTCAATGATATATATACATACACAGGGAGCATTTTAATAGCTGTTAATCCCTTCACAAAACTTCCTCATTTGTATGATATCCATATGATGGAGCAATACAAGGGAGCTCCGTTGGGTGAGCTTAGCCCACATGTTTTTGCTGTTGCTGATGCATCTTATAGAGCAATGATGAATGAAGGTAAAAGTCAATCTATCTTGGTCAGTGGTGAAAGTGGTGCTGGAAAAACTGAGACAACAAAATTGATTATGCAGTATCTGACCTTTGTTGGTGGACGAGCTGCTGGTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCGAATCCACTTTTAGAGGCATTTGGTAATGCAAGGACTGTCAGGAATGACAATTCAAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAATGGAAGAATATCCGGTGCTGCAATTAGAACTTACTTATTGGAAAGATCACGAGTAGTGCAGATAACGGATCCCGAAAGAAATTATCACTGCTTTTATCAGTTGTGTTCATTTGAAAGGGACGCAGAGAAGTATAAGTTAGGACATCCGAGTCACTTCCACTATTTAAATCAAAGTAAGATCTATGAACTAGATGGTGTAAGCAATGCAGAGGAATACATGAAGACGAGGAGGGCAATGGATATTGTTGGCATCAGTCATGAGGATCAGGAAGCCATATTTCGTGTCTTAGCTGCAATTTTACACTTGGGAAATATTGAATTTTCTCCTGGTAAAGAGCATGATTCGTCAGCAATAAAGGATGAAAAATCAAGATTTCATATGCAGATGGCTGCTAATCTTTTCATGTGTGACGTAGATGTACTGCTAGCAACATTGTGTTCTCGTTCAATACAAACTCGAGAAGGAAGTATTGTCAAGGCTCTTGATTGCAATGCTGCTGTTGCTGGCCGAGATGCCTTGGCAAAAACTGTTTACGCTCGTTTATTTGATTGGCTTGTTGATAAGATAAATAGGTCTGTTGGGCAAGATATCAATTCCCAGATACAAATCGGAGTTTTGGATATTTATGGTTTTGAGTGCTTTAAGGATAACAGTTTTGAGCAATTCTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCACGTATTCAAGATGGAGCAGGAGGAATATTGCAAAGAAGAAATTAACTGGAGTTACATTGAATTTGTAGACAACCAAGATGTTTTAGATTTGATTGAAAAGAAACCCATTGGTATAATTGCTCTGTTGGATGAAGCTTGCATGTTTCCAAAATCAACGCATGAAACATTCTCAACTAAGTTGTTTCAGCATTTCCGATCTCACCCTAGGTTGGAAAAGGAAAAGTTTTCACAAACAGATTTTACCATTTCTCATTATGCTGGCAAGGTCACTTATCATACAGATACCTTTTTGGATAAAAATCGTGATTATGTGGTTGTAGAACATTGTAATCTTTTGTCTTCTTCAAAATGCCCCTTTGTGTCTGGTCTTCTCCCTTTGCTACCAGAGGAATCTTCAAGATCATCATACAAGTTTTCTTCAGTAGCTTCTAGATTTAAGCAACAACTTCAAGCACTCATGGAGACCCTAAACACAACAGAGCCTCATTACATACGATGTGTGAAACCAAATTCTTTGAATCGACCACAAATATTTGAGAATGCAAGCGTCATACACCAGTTACGCTGTGGGGGCGTCCTTGAAGCTGTTCGGATAAGTCTAGCAGGGTACCCCACTCGAAGAACATACTCAGAGTTTGTGGATCGCTTTGGGTTAATAGCCCCTGAATTTATGGATGGAATTTACGATGATAAAGCTACAACGGAGAAAATTTTGCAAAAGCTCAAGCTTGAGAATTTTCAGTTGGGTAGGACCAAAGTATTTCTCAGGGCTGGTCAAATTGGCGTTTTGGACTCCAAACGTGCTGAGGTGTTGGACAATGCTGCAAAGTGTATTCAGCGCCGACTGAGGACATTTATTGCACGTAGGGATTTTATTGCAGTCAGAGATGCTGCATTTTCTCTTCAGGCATGCTGCAGGGGATACATTGCCCAAAAGATGTATGCTGTAAAAAGAGAGAACGCAGCTGCCATCTCCATTCAAAAGTATATTCGAATGTGGCTAATGAGGCATGTGTACTTGAAACTACATTCTTCTGCTATTATCTTACAGTCTCATGTTCGAGGTTTCGTGACTCGCCAAAGATTCTTGCATGGAAAAGAGCATAGAGCTGCTACTTCTATTCAGGCCTGTTGGAGAATGTACAAGGTTAGGTCAGCTTTCCAGCGACATCAAGCTTCAATTGTGGCAATACAATGCCTTTGGCGGTGTAGACAAGCAAAAAGGGAGCTTCGTAGACTTAAACAAGAGGCTAATGAAGCTGGTGCCCTTCGTTTAGCTAAGAATAAACTTGAGAAGCAATTGGAAGAGCTCACATGGCGTTTGCATCTTGAAAAGAAAATAAGGGTTTCTAATGAAGAGGCTAAGCAAATAGAGATTTCCAAACTTCAAAAGGTGATTGAAGCTCTGAATCTTGAATTAGATGCAGCTAAATTGGCTACAATTAATGAGTGCAACAAGAATGCAGTTCTGCAAAATCAATTGGAATTGTCTATGAAGGAAAAATCTGCTTTAAAAAGAGAGCTAGTTTCTGTGGATGAAGTACGGAAGGAAAATGCTACGCTAAAGGTTTCATTGGATGCCTTTGAAAAGAAGTACGCAGCTTTAGAGCTTCAGCTTTCAAATACTCAAAAAGGCCATGATGAAACAATTGAGAAACTATGGGAATTTGAACAGAAGTGCTCTCAACTCGAGCAAAATGTGAAAAGCCTTGAGGAAAAACTATTGAGTTTAGAGGATGAAAATCATGTGCTTCGTCAGAAAGCCTTAAGTGCTCCTAGGAGTAACCGCCTGGGTTATGCAAAATCACTGTCTGAAAAATACTCAAGTGCAATAGCTTCCCGCACTGAGCGAAAGCCCATATTTGAGTCACCCACACCCACAAAGCTTATTGCCCCTTATACTCTAGGCTTGTCAGACTCTCGTCGATCTAAGTTAACTGCAGAAAAGCACCAGGATAACTATGAATTCCTCTCTAGGTGTATCAAAGAAAATTTGGGATTCAAAAATGGTAAACCTCTCGCTGCTCGTATCATATACAAATGTCTTCTTCATTGGCATGCCTTTGAATCTGAGCGCACAGCCATTTTTGACTACATAATTGAAGGCATAAATGAGGTTCTAAAGGTTAGGGATGATGACATAGTCTTGCCATATTGGCTGTCCAATACTTCTGCACTTCTATGCCTCTTACAGAGGAACTTACGATCAAATGGATTTTTAACTACCACTGCTCAACGTTATATTGGATCAGCTGGCTTGACCAGCAGGACTGGGCATGGCCCAAAATCGCCATTGAAGATTATTGGATATGATGATGGCATGTCACATGTGGAGGCGAGATATCCAGCTATACTTTTTAAGCAACAACTAACTGCTTGTGTAGAAAAAATTTTTGGCCTTCTGCGTGACAATTTGAAAAAGGAACTTTCTCCCATACTGGGATTATGTATTCAGACACCCAAAACTGGAAGAGCACATGGTGGAAAATCATCTAGATCTCCTGGTGGGCTTCCCCAACAATCATCTGGTGGTCAGTGGGGCAACATTGTCAAATTTTTGGATTCACTCATGGGCAAACTTCGGGAAAATCATGTATGTTCTGTAGTGTTTCAATGGTCTCTTTGTTACTGTGTTTGTTTTTTTCAATTTTAA 3846 0.3991 MTRLAYLNEPGVLYNLRRRYALNDIYTYTGSILIAVNPFTKLPHLYDIHMMEQYKGAPLGELSPHVFAVADASYRAMMNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCSFERDAEKYKLGHPSHFHYLNQSKIYELDGVSNAEEYMKTRRAMDIVGISHEDQEAIFRVLAAILHLGNIEFSPGKEHDSSAIKDEKSRFHMQMAANLFMCDVDVLLATLCSRSIQTREGSIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINRSVGQDINSQIQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYCKEEINWSYIEFVDNQDVLDLIEKKPIGIIALLDEACMFPKSTHETFSTKLFQHFRSHPRLEKEKFSQTDFTISHYAGKVTYHTDTFLDKNRDYVVVEHCNLLSSSKCPFVSGLLPLLPEESSRSSYKFSSVASRFKQQLQALMETLNTTEPHYIRCVKPNSLNRPQIFENASVIHQLRCGGVLEAVRISLAGYPTRRTYSEFVDRFGLIAPEFMDGIYDDKATTEKILQKLKLENFQLGRTKVFLRAGQIGVLDSKRAEVLDNAAKCIQRRLRTFIARRDFIAVRDAAFSLQACCRGYIAQKMYAVKRENAAAISIQKYIRMWLMRHVYLKLHSSAIILQSHVRGFVTRQRFLHGKEHRAATSIQACWRMYKVRSAFQRHQASIVAIQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQLEELTWRLHLEKKIRVSNEEAKQIEISKLQKVIEALNLELDAAKLATINECNKNAVLQNQLELSMKEKSALKRELVSVDEVRKENATLKVSLDAFEKKYAALELQLSNTQKGHDETIEKLWEFEQKCSQLEQNVKSLEEKLLSLEDENHVLRQKALSAPRSNRLGYAKSLSEKYSSAIASRTERKPIFESPTPTKLIAPYTLGLSDSRRSKLTAEKHQDNYEFLSRCIKENLGFKNGKPLAARIIYKCLLHWHAFESERTAIFDYIIEGINEVLKVRDDDIVLPYWLSNTSALLCLLQRNLRSNGFLTTTAQRYIGSAGLTSRTGHGPKSPLKIIGYDDGMSHVEARYPAILFKQQLTACVEKIFGLLRDNLKKELSPILGLCIQTPKTGRAHGGKSSRSPGGLPQQSSGGQWGNIVKFLDSLMGKLRENHVCSVVFQWSLCYCVCFFQF. 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03380 1281 ProSiteProfiles IQ motif profile. 693 721 IPR000048 GO:0005515
Seca8g03380 1281 PRINTS Myosin heavy chain signature 83 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g03380 1281 PRINTS Myosin heavy chain signature 130 157 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g03380 1281 PRINTS Myosin heavy chain signature 26 45 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g03380 1281 PRINTS Myosin heavy chain signature 362 390 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g03380 1281 PRINTS Myosin heavy chain signature 415 443 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g03380 1281 Coils Coil 909 985 - -
Seca8g03380 1281 ProSiteProfiles Myosin motor domain profile. 1 666 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g03380 1281 ProSiteProfiles IQ motif profile. 717 743 IPR000048 GO:0005515
Seca8g03380 1281 Gene3D - 718 766 - -
Seca8g03380 1281 Gene3D - 668 717 - -
Seca8g03380 1281 Gene3D - 767 816 - -
Seca8g03380 1281 PANTHER MYOSIN 739 1216 - -
Seca8g03380 1281 FunFam Myosin heavy chain 186 240 - -
Seca8g03380 1281 MobiDBLite consensus disorder prediction 1219 1241 - -
Seca8g03380 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 715 IPR027417 -
Seca8g03380 1281 Pfam Myosin head (motor domain) 1 654 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g03380 1281 ProSiteProfiles IQ motif profile. 788 817 IPR000048 GO:0005515
Seca8g03380 1281 CDD MYSc_Myo11 10 654 IPR036018 -
Seca8g03380 1281 SMART MYSc_2a 1 667 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g03380 1281 Coils Coil 850 877 - -
Seca8g03380 1281 Gene3D - 372 557 - -
Seca8g03380 1281 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
Seca8g03380 1281 Coils Coil 801 845 - -
Seca8g03380 1281 Pfam IQ calmodulin-binding motif 741 760 IPR000048 GO:0005515
Seca8g03380 1281 Pfam IQ calmodulin-binding motif 766 786 IPR000048 GO:0005515
Seca8g03380 1281 Pfam IQ calmodulin-binding motif 719 737 IPR000048 GO:0005515
Seca8g03380 1281 Pfam IQ calmodulin-binding motif 671 689 IPR000048 GO:0005515
Seca8g03380 1281 Gene3D Kinesin motor domain 1 596 IPR036961 -
Seca8g03380 1281 ProSiteProfiles Dilute domain profile. 1095 1281 IPR002710 -
Seca8g03380 1281 Coils Coil 885 905 - -
Seca8g03380 1281 ProSiteProfiles IQ motif profile. 740 769 IPR000048 GO:0005515
Seca8g03380 1281 SMART iq_5 787 809 IPR000048 GO:0005515
Seca8g03380 1281 SMART iq_5 716 738 IPR000048 GO:0005515
Seca8g03380 1281 SMART iq_5 739 761 IPR000048 GO:0005515
Seca8g03380 1281 SMART iq_5 764 786 IPR000048 GO:0005515
Seca8g03380 1281 SMART iq_5 691 713 IPR000048 GO:0005515
Seca8g03380 1281 SMART iq_5 668 690 IPR000048 GO:0005515
Seca8g03380 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 764 815 IPR027417 -
Seca8g03380 1281 Gene3D Myosin VI head, motor domain, U50 subdomain 245 535 - -
Seca8g03380 1281 Gene3D - 186 243 - -
Seca8g03380 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 715 762 IPR027417 -
Seca8g03380 1281 Gene3D - 600 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03380 Seca-Chr8 97172272 97200899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03380 1 1265 Myosins gene family AT4G33200 72.038 0.0 1878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03380 K10357 - gmx:100790815 2276.52