Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03379 ATGGACGCTGCTGAGCAGATTTCCGAAGAATGGAATTCTCTAAGTGGAGTGTACACAGCGGAGGAAGCTGACTTTATGACTCAGTTACTTGATGTGTCTGCATTTTGGCCTGCCCATCATGAATCCAATGTGATGACAGAATCAATCAATTATTCTTCAAATTCAATAGTTGCTAATAATACCGATTTGTTCTGTTTCTCCCAAGGGAGTACTACTCATAATGGAGGAACATGCTCTTTAGATCCGGCAATTAATTACTTTGGCTCCATGCCCTTGGGGGATACCAATTTCACTTCTCAATGGAATCACAACACTCATGATATTCAAGAGTGTCAAATGCTACTTTCTGATCAATCTGCCATACAGGATAGAGGCAGAGACCTGGACAACCCACCAAAAAGATTTAAGAGCTCAATGACAATGAAGGTCTCAGAGAACAGGATGAATGATTTTGAGCTAAAAAGAGGGCCATCTTCAACTTCAAGCCTGACCCCAAAAGATTTAAATTGCAAATCAAAAGCTAACAAAGGTCTTGCCACTGATCCACAGAGCCTTTATGCAAGAAGAAGAAGAGAGAGAATAAATGAGAGGTTGAAAATTCTACAAAATCTTGTCCCTAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTCAAGTTTTTGCAACTCCAAATAAAGCTTCTGAGCTCTGATGATATGTGGATGTATGCTCCCATTGCTTACAATGGAATAAATATTGGAATTGACCTCAATATTCCTCCAAGAAAACAATCACAGGGACCACAACACAACGATTAA 816 0.3995 MDAAEQISEEWNSLSGVYTAEEADFMTQLLDVSAFWPAHHESNVMTESINYSSNSIVANNTDLFCFSQGSTTHNGGTCSLDPAINYFGSMPLGDTNFTSQWNHNTHDIQECQMLLSDQSAIQDRGRDLDNPPKRFKSSMTMKVSENRMNDFELKRGPSSTSSLTPKDLNCKSKANKGLATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDMWMYAPIAYNGINIGIDLNIPPRKQSQGPQHND. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03379 271 SMART finulus 184 233 IPR011598 GO:0046983
Seca8g03379 271 CDD bHLH_AtIND_like 179 241 - -
Seca8g03379 271 Pfam Helix-loop-helix DNA-binding domain 188 228 IPR011598 GO:0046983
Seca8g03379 271 MobiDBLite consensus disorder prediction 152 180 - -
Seca8g03379 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 244 IPR036638 GO:0046983
Seca8g03379 271 Gene3D - 182 236 IPR036638 GO:0046983
Seca8g03379 271 FunFam Basic helix-loop-helix transcription factor 179 236 - -
Seca8g03379 271 MobiDBLite consensus disorder prediction 153 169 - -
Seca8g03379 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Seca8g03379 271 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03379 Seca-Chr8 97122827 97124238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03379 167 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 82.955 7.57e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g03379 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03379 - - gmx:100817334 229.565