Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03352 ATGTGTTGCCACACTCACTCCACAGAGAGAGAGAAAGAGAGGTCAAATAGTTTAGGCTTTCATCTTTCCCTCCATTCATTCCCCTTTTGCACACACACTCTTCACTCAGTCTTTTCACCTCCAACTCCTCAAAACATGGACGGAGGTGCTCCGTACAATCCTCGTACTGTCGAAGAGGTCTTCAGGGATTTCAAGGGTCGCAGAGCTGCCTTGATTAAGGCCCTCACCTCTGATGTCGAAGAGTTCTACCAGCAGTGCGATCCTGGTAACGTTTCATTTCGTAAAAAAATATTATTATTATTTGTCCAGGATACAGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAAGAAGTGCCCCCAGAGCTTCCAGAGCCAGCATTGGGTATTAACTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTACTTGCCGTAGCCTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAACGACTATTTAATATGATCAATGATCTTCCGACAATATTTGAAGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTCTCTAATCATAGCAGTAACAAATCCAAATCAAACTCTAAGAGTGGTTCTGAATCTCAGGCGAAGTATTCAAAACCAATGCAATCAAAGGACGAGGATGAGGATGGTCTGGGTTTGGAAGAGGAAGATGAAGAGGAACATGGAGAGACATTGTGCGGGGCATGTGGAGAGAGCTATGCAGCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATTACCCCTGCAAGGGCTGAGCATATCAAGCAGTACAAATGTCCATCTTGCAGCAATAAGAGAGCTAGACCTTGA 954 0.4423 MCCHTHSTEREKERSNSLGFHLSLHSFPFCTHTLHSVFSPPTPQNMDGGAPYNPRTVEEVFRDFKGRRAALIKALTSDVEEFYQQCDPGNVSFRKKILLLFVQDTEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKSGSESQAKYSKPMQSKDEDEDGLGLEEEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03352 317 ProSiteProfiles Zinc finger PHD-type profile. 261 313 IPR019787 -
Seca8g03352 317 FunFam PHD finger alfin-like protein 256 312 - -
Seca8g03352 317 SUPERFAMILY FYVE/PHD zinc finger 253 314 IPR011011 -
Seca8g03352 317 SMART PHD_3 263 311 IPR001965 -
Seca8g03352 317 CDD PHD_AL_plant 263 313 IPR044104 -
Seca8g03352 317 ProSitePatterns Zinc finger PHD-type signature. 264 310 IPR019786 -
Seca8g03352 317 PANTHER CPG BINDING PROTEIN 53 316 IPR045104 GO:0006355|GO:0042393
Seca8g03352 317 MobiDBLite consensus disorder prediction 212 236 - -
Seca8g03352 317 MobiDBLite consensus disorder prediction 207 255 - -
Seca8g03352 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 312 IPR013083 -
Seca8g03352 317 Pfam PHD-finger 264 313 IPR019787 -
Seca8g03352 317 Pfam Alfin 56 201 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03352 Seca-Chr8 96107387 96115494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03352 46 316 Alfin-like Transcription Factor Family AT3G42790 72.794 3.24e-124 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca8g03352 Alfin 3.8e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03352 K26274 - vvi:100247536 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03352 8 96107387 96115494 Seca8g03352 8 96107387 96115494 ECH