Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03351 ATGAGTTTAAGTCAAACCGAGGATGATTCAATCTCAGAAGCTCACATTCAAGTCCCAGCAGAAATTGACTGGCACATGCTTGACAAATCCAAGTTCTTCTTCCTAGGTGCAGCCTTATTCTCTGGTCTATCAGCTGCACTTTACCCTGTTGTTGTATTGAAAACACGCCAACAAGTTTCCTCAGCAAAGATCTCATGCCGCAACATGTCCTCTGCCATCATGCGCTATGAAGGCTTCAGGGGATTCTACAGAGGCTTTGGCACTTCATTGATGGGAACAATCCCAGCAAGAGCACTTTACATGTCTGCACTTGAAGTCACCAAGAGCCACGTTGGCACTGCTAGTGTTCAATTGGGGTTTTCAGATACAACTTCCACTGCAATAGCTAATGCTGCTGGTGGGGTAGCTTCTGCTATGGCTGCACAATTAGTTTGGACCCCTGTTGATGTTGTCAGCCAGAGACTAATGGTTCAAGGTAGTAGCAACAAGTACAACAATGTGATCCATGATCTTAACTCTTACAGGAATGGTTTTGATGCTTTCAGGAAAATCCTCTGTGCAGATGGATTGAGAGGGTTGTATAGGGGATTTGGGGTTTCAATTGTGACTTATGCACCTTCTAATGCGGTTTGGTGGGCTTCTTATTCTTTGGCACATAGACTCATTTGGGGTGCTTTTGGTTGTCATATGGGTGAGACTGATTCCAAGGCAATGGTGGGGGTTCAAGGGTTGAGTGCGGTTATGGCTAGTGGAATTTCAGCAATTATGACTATGCCTCTTGACACGGTTAAGACAAGGTTGCAAGTGTTGGATGCTGAGGAGAATGGAAGAAGAAAGCCACTAACTTTTTTGGAGACAGTTAGGAATTTGATGAAGGAAGGTGGAGTCAAAGCTTGTTACAGGGGATTGGGACCAAGATGGGCTTCAATGTCCATGTCTGCAACAACCATGATTACTACCTATGAGTTCTTGAAACGAATGTCTACTAAGAATCTAGATAGATTAAATGAACTGCGTGATAGTATATAA 1029 0.4383 MSLSQTEDDSISEAHIQVPAEIDWHMLDKSKFFFLGAALFSGLSAALYPVVVLKTRQQVSSAKISCRNMSSAIMRYEGFRGFYRGFGTSLMGTIPARALYMSALEVTKSHVGTASVQLGFSDTTSTAIANAAGGVASAMAAQLVWTPVDVVSQRLMVQGSSNKYNNVIHDLNSYRNGFDAFRKILCADGLRGLYRGFGVSIVTYAPSNAVWWASYSLAHRLIWGAFGCHMGETDSKAMVGVQGLSAVMASGISAIMTMPLDTVKTRLQVLDAEENGRRKPLTFLETVRNLMKEGGVKACYRGLGPRWASMSMSATTMITTYEFLKRMSTKNLDRLNELRDSI. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03351 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 221 IPR018108 -
Seca8g03351 342 SUPERFAMILY Mitochondrial carrier 26 324 IPR023395 -
Seca8g03351 342 Gene3D Mitochondrial carrier domain 25 171 IPR023395 -
Seca8g03351 342 Pfam Mitochondrial carrier protein 126 223 IPR018108 -
Seca8g03351 342 Pfam Mitochondrial carrier protein 242 331 IPR018108 -
Seca8g03351 342 Pfam Mitochondrial carrier protein 44 111 IPR018108 -
Seca8g03351 342 Gene3D Mitochondrial carrier domain 172 338 IPR023395 -
Seca8g03351 342 PRINTS Mitochondrial carrier protein signature 83 101 IPR002067 GO:0055085
Seca8g03351 342 PRINTS Mitochondrial carrier protein signature 134 156 IPR002067 GO:0055085
Seca8g03351 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 237 327 IPR018108 -
Seca8g03351 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 28 110 IPR018108 -
Seca8g03351 342 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 14 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03351 Seca-Chr8 96099658 96100686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03351 15 331 Chloroplast and Mitochondria Gene Families AT5G26200 67.500 5.45e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03351 K15121 - gmx:100784202 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03351 8 96099658 96100686 Seca8g03351 8 96099658 96100686 ECH
Seca4g01200 4 19170919 19171965 Seca8g03351 8 96099658 96100686 ECH