Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03349 ATGGAGTGTGTTTATTTAATTGCGTGGGCCTTCATCCTTTCTTTTCATATCAATTGCATTAATTGCATCAAAATGGCAGACAGAAATCCAAGATCACCAGATTCATCACCTGACAGTGATTTCACCAACCAGTGGCCTTTTGAGCTCTCTGAGTACTTGAAATTCGATGATAATCCATGGTTACATGATGAGCCGGATTCATTTGTTTCTGAGCATGTTTCAAACCAGTTTTATCAAACCAATTACCAGCCAGGTGATTTTGGAGGAAGTGGAAGCCATGAAGGGTCTTCCAGCAGAGACACTAGCAGTGGGCGGGAGCAGAAGGAAGTTAGAGAGAGAGTTGCGTTCAAAACAAAGTCAGAGGTCGAAATACTAGATGATGGGTATAGATGGAGGAAGTATGGAAAGAAAATGGTGAAGAACAGTCCCAATCCAAGGAATTACTATAGGTGTTCAGTAGATGGATGTCCCGTAAAAAAGAGAGTTGAGAGAGATAAGGACGATGCAATGTATGTAATAACAACTTACGAAGGCATGCACACTCACCCGAGTTCTTGCTAG 561 0.4189 MECVYLIAWAFILSFHINCINCIKMADRNPRSPDSSPDSDFTNQWPFELSEYLKFDDNPWLHDEPDSFVSEHVSNQFYQTNYQPGDFGGSGSHEGSSSRDTSSGREQKEVRERVAFKTKSEVEILDDGYRWRKYGKKMVKNSPNPRNYYRCSVDGCPVKKRVERDKDDAMYVITTYEGMHTHPSSC. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03349 186 FunFam WRKY transcription factor 57 111 185 - -
Seca8g03349 186 Pfam WRKY DNA -binding domain 126 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g03349 186 ProSiteProfiles WRKY domain profile. 120 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g03349 186 MobiDBLite consensus disorder prediction 84 112 - -
Seca8g03349 186 Gene3D WRKY domain 112 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g03349 186 SMART WRKY_cls 125 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g03349 186 SUPERFAMILY WRKY DNA-binding domain 118 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g03349 186 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 184 IPR044810 GO:0003700
Seca8g03349 186 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03349 Seca-Chr8 96032242 96034314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03349 47 184 WRKY Transcription Factor Family AT5G26170 52.597 8.55e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g03349 WRKY 5.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03349 - - gmx:100796836 237.269