Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03344 ATGCGTTGCCTCAGATCCAGGCAACTCATGGTGGCTGTTCCCCGCTCCCTAGAGTTGACAAAGGGCTCCTTAGGAATGGAAAATGCCACCCTTCACATTCTAAGATCCTTTTCAATCAGAAAAGCAGGTATTTCAATGGAGGAGGTGTTGTTCGTGGTTACAGTGCCATTAAGAGTAGGTAACTCAGTCTGTGATAACCCAACCGTAGCTACCCACATGGATGTACCCAGATTTAAACTGATGGCAGATGCAGGGTCCTTATCTAATTCTGTAACTAAGGTTTCCACTGAGACGGTTGCAGGTTCCAAAGATGGTCATAATGGTGACAATTTGGAGGATGAAGTTGGTACTACAGAAGTCACACCCCCAGAACCGGATAGGGAAGGAGAAAGTCCTTTGTTGGATATGATATCTCAAAATAAAAGCACTTTTGTTGCTGGTGATGTAGCTTTAACCCAAGAAATTGAGGAGGATGATTCATTGTCATTAGAAGGTGACCAGCTTATTGATAGCTCATGTTCTCTTTCAGTAGTCAGTGAGAACAGTAGTGTATGTGGAGAAGAGTTAATCAATTCTGATGCTACTTCAGAAGTTGGGACACCATGTTCCATAGACATAGAGAAGAGCATCTGTCCTGCCAATAATGTTTCCCAGGCTAGTGATTTGGGGGAGTCAAATGTTGATGCAGATATTATGAGTGAACCCCTTGCTGTTGCAGTGAGCCTTGATGAAGAGACTGGAGTTGGATCTGGCCCAAAACCTTCTACAGTTGATCTTCAACAGCTGCCTCAGGAAAAGACAGCTGTAACAGTTGGTCGGAGTGTTTTTGAATTGGATTATACACCACTTTGGGGATTCATATCTCTGTGTGGAAGAAGACCTGAAATGGAAGATGCAGTTGCAACTGTACCCCGATTTTTGAAAATTCCTATTCAAATGCTAATTGGTGATCGGGTAATTGATGGAATGGACAAGTGTTTTAGTCAGCAGATGACCCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTGGCAAAGTATTGTCGTGATCGTATCCATTTGGCCTTGTCTGAGGAAATAGAATTTGTCAAGGAAGGTCTAATTAATGGAAGTATCAAGGATGGTTGTCAAGACCAGTGGAGAAAAGCTTTCACCAATTGTTTCTTAAAGGTTGATGCTGAAGTTGGAGGAAAAGTTAATAATGAACCTGTTGCCCCAGAAACTGTTGGCTCTACTGCTGTTGTTGCTCTTATCAGTTCATCTCATATTATAGTTGCAAATTGTGGTGATTCAAGAGCGGTTCTATGTCGTGGAAAAGAACCGATGGCATTATCAGTGGACCATAAACCAAACCGAGATGATGAATATGCAAGAATTGAGGCAGCTGGAGGAAAGGTGATACAATGGAATGGCCATCGTGTATTCGGTGTTCTTGCAATGTCCAGGTCTATTGGTGATAGATATTTGAAACCATGGATTATTCCAGAACCAGAAGTTAGGTTTCTTCCTCGTGCGAAAGATGATGAGTGTCTCATTCTGGCCAGTGATGGTCTGTGGGATGTCATGACAAATGAAGAGGTGTGTGATCTGGCTCGGAAAAGAATACTTCTCTGGTACAAAAAAAATGGCTTGGAACTACCCTCTGAAAGAGGAGAGGGAATTGATCCTGCTGCACAAGCAGCAGCAGAGTACCTATCAAACCGTGCTCTTCAGAAAGGAAGCAAAGATAACATCACTGTGATTGTGGTGGATTTGAAACCTCAAAGAAAATATAAGAGCAAGACATGA 1794 0.4275 MRCLRSRQLMVAVPRSLELTKGSLGMENATLHILRSFSIRKAGISMEEVLFVVTVPLRVGNSVCDNPTVATHMDVPRFKLMADAGSLSNSVTKVSTETVAGSKDGHNGDNLEDEVGTTEVTPPEPDREGESPLLDMISQNKSTFVAGDVALTQEIEEDDSLSLEGDQLIDSSCSLSVVSENSSVCGEELINSDATSEVGTPCSIDIEKSICPANNVSQASDLGESNVDADIMSEPLAVAVSLDEETGVGSGPKPSTVDLQQLPQEKTAVTVGRSVFELDYTPLWGFISLCGRRPEMEDAVATVPRFLKIPIQMLIGDRVIDGMDKCFSQQMTHFFGVYDGHGGSQVAKYCRDRIHLALSEEIEFVKEGLINGSIKDGCQDQWRKAFTNCFLKVDAEVGGKVNNEPVAPETVGSTAVVALISSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVRFLPRAKDDECLILASDGLWDVMTNEEVCDLARKRILLWYKKNGLELPSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKPQRKYKSKT. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03344 597 SUPERFAMILY PP2C-like 274 589 IPR036457 -
Seca8g03344 597 CDD PP2Cc 288 587 IPR001932 -
Seca8g03344 597 SMART PP2C_4 273 585 IPR001932 -
Seca8g03344 597 FunFam Protein phosphatase 2C 16 271 597 - -
Seca8g03344 597 ProSiteProfiles PPM-type phosphatase domain profile. 283 587 IPR001932 -
Seca8g03344 597 Pfam Protein phosphatase 2C 320 580 IPR001932 -
Seca8g03344 597 ProSitePatterns PPM-type phosphatase domain signature. 334 342 IPR000222 GO:0043169
Seca8g03344 597 MobiDBLite consensus disorder prediction 93 132 - -
Seca8g03344 597 PANTHER PROTEIN PHOSPHATASE 229 587 IPR015655 GO:0004722|GO:0006470
Seca8g03344 597 Gene3D - 270 597 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03344 Seca-Chr8 95925625 95931469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03344 145 597 PP2C-type Phosphatase Gene Family AT1G17550 53.118 1.88e-161 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03344 K14497 - gmx:100805281 910.598