Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03341 ATGTCGACGGTGTACGTTCTGGAACCGCCGACGAAGGGGAAGGTTGTGGTGAACACGACGCGGGGCCCTCTGGACATTGAGCTGTGGCCCAAAGAGGCTCCCAAAGCCGTCAGGAACTTCGTCCAACTCTGCCTCGAAGGCTATTACAACAATACCATCTTCCACCGTATCATCAAGGACTTCCTCATCCAAGGTGGCGACCCCACCGGCACCGGCACCGGTGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCACGTATCAAATTCAAGCACAGAGGTTTGGTTGCAATGGCTAATGCTGGATCAGCGAATTCCAATGGAAGTCAGTTTTTCATTACTCTCGACCGTTGTGACTGGCTTGATCGGAAGCATACCATTTTCGGAAAGGTCACGGGAGATACAATGTATAATCTGTTGAGACTGGGTGAAGTTGAAACCGATAAGAATGACCGGCCTTTAGATCCAACCCCGAAGATATTGTCAGTTGAGGTATTGTGGAACCCATTTGAAGATATTGTTCCAAGAACACTTCAGACTCAGAAACCTCAGATTAAAGCTACACCTGATACAGACAGTAAGGAGTCAAAGAAGAAAGGGGTCAAAAATTTGAGCTTGCTTTCATTTGCGGAAGAAACTGAAGAAGAGGAAAAAGAATTGGCATTGGTGAAGCAAAAGATTAAGAGCAGCCACGATGTCTTGAATGATCCTCGGCTTCTAAAGGAAGAAACTCCTAATAATGATTTGAGTTCATCTGGGGGTAAAGCAACAAGGGATCTGCAGTTATCTGTAAGGGATGCCCTTAACTCAAAGAAAGAAGAGCCTCAGAAAGATTCAGAAGCTGGTAATTTGGCTCATCTTGATTCCAGTGATGATGATGAAGCAGATTTTGATGCAAGAATGCGGATGCAAATACTCAAAAAGCGGACAGAATTGGGTGATCTCCCTCCCAAGCCAAAGTTGCAAAATGGAAGTGCCAGTTCAAAGGACCATGATACGTCAGCAGCCAGATCCAGTGCTGTAAGTGATGATGAGGATCAACCAAGAGTGGAAAAATTGTCCTTGAAGAAAAAGGGAATAGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATTTGCAGCTATTGAATGAAGCTGAGAGAGGAAGACAGTTGCGGAAGCAAAAGAAACGCAGACTTCAGGGGCGTGAAGATGAAGTTCTGGCAAAACTTGAAAAATTTAAGAATGCTTTATCAGCAAAGGCGACAGCAACAACTGGTGAATCTGGACATGTTAATGATGACGAATTATCTGACTGGAAAAGTGTTAACTTAAAATTTGCCGCTGAGACTGGCAAGGACCGCATGTCTCGCAATGAGGACCCAAATGACTATGTTGTGCATGACCCTCTTTTGGAGAAGGGGAAAGAGAAGTTCAATAGGATGCAAGCCAAACAAAAGAGGCAAAAACGGGAGTGGGCTGGGAGATCACTTACTTGA 1497 0.4489 MSTVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAVRNFVQLCLEGYYNNTIFHRIIKDFLIQGGDPTGTGTGGESIYGGVFADEFHSRIKFKHRGLVAMANAGSANSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPTPKILSVEVLWNPFEDIVPRTLQTQKPQIKATPDTDSKESKKKGVKNLSLLSFAEETEEEEKELALVKQKIKSSHDVLNDPRLLKEETPNNDLSSSGGKATRDLQLSVRDALNSKKEEPQKDSEAGNLAHLDSSDDDEADFDARMRMQILKKRTELGDLPPKPKLQNGSASSKDHDTSAARSSAVSDDEDQPRVEKLSLKKKGIGSEARAERMANADADLQLLNEAERGRQLRKQKKRRLQGREDEVLAKLEKFKNALSAKATATTGESGHVNDDELSDWKSVNLKFAAETGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMQAKQKRQKREWAGRSLT. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03341 498 Coils Coil 471 491 - -
Seca8g03341 498 Gene3D - 2 183 IPR029000 -
Seca8g03341 498 MobiDBLite consensus disorder prediction 268 298 - -
Seca8g03341 498 MobiDBLite consensus disorder prediction 324 338 - -
Seca8g03341 498 MobiDBLite consensus disorder prediction 311 403 - -
Seca8g03341 498 MobiDBLite consensus disorder prediction 181 202 - -
Seca8g03341 498 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Seca8g03341 498 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 180 - -
Seca8g03341 498 MobiDBLite consensus disorder prediction 451 498 - -
Seca8g03341 498 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Seca8g03341 498 SUPERFAMILY Cyclophilin-like 14 186 IPR029000 -
Seca8g03341 498 CDD cyclophilin_CeCYP16-like 8 180 - -
Seca8g03341 498 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Seca8g03341 498 MobiDBLite consensus disorder prediction 339 373 - -
Seca8g03341 498 MobiDBLite consensus disorder prediction 247 261 - -
Seca8g03341 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Seca8g03341 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Seca8g03341 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Seca8g03341 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Seca8g03341 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Seca8g03341 498 MobiDBLite consensus disorder prediction 238 298 - -
Seca8g03341 498 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 220 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03341 Seca-Chr8 95857830 95865223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03341 9 173 U-box Gene Family AT5G67530 48.485 3.33e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03341 K12737 - gmx:100793148 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03341 8 95857830 95865223 Seca8g03341 8 95857830 95865223 ECH