LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g03340	ATGTCTTCCCATGATGGCACCGCCACCGTAAACGTCATCATGGTGGCTGTAGACAAAGACAAGAACAGTGCTCACGCCTTCCGTTGGGCAATGAATCATGTTGATAACCCAATCATCATTGCAGTTCATGTTAAGCACAAAAACATTCTCCATCAGGGCACCAATGTTTTTCCTCCTGACGAAGACGATGTGGCTAATATTTTCGATCCCTTGCGTCAAATGTGTCTTCGTAAAGTCGTTAAGATGAAAGAAGCCGTAATCGATGATAGCGATGTTGTTGGGGGAATTTTGGAATATGCACAGAGAAATCACATCCCGACTATCGTTGTTGGTGCAGCCTCCTCCGCAACCAAGAACACTCTTCTGGCAAGGTCTCTAAACATGAGGATTGGAAGCAAAAAATTTAAAGGTCTTGATGTGTCAACGGCCATAATCAAAGCGGCTCCAGATTTTAGTTCTGTTTATGTAATTTCGAAAGGGAAGATAGTGAGATCGCGACCAGCAATAAGCCCGTTGGGAAATGTGGCTGCAGAACCAAAACAACCATTTGGACTTACACATAGTGGATCAGAAAATGCAGCAAGGACACAAGCATTTAGAAGAGGGAGCACCAATAGTAGATTTGAAAGATCACCTCTACATGAGAGGCCAAGGATTTCTTCAGCTAGTCAGTCAATGGAGTACATTGATCTATCCATTAGTGGACAGAGGTCACCGTTTTTTAGCCGTAACTCAAGCTCAGGTGGAAGTGACTCTTCAAGGTCATATAAGTTTGGTTCACCAGATGTAACTAAACAGGATTCTGATTTAACCTTAAAATCAGAATCCCAACCCTCTGGAGATATGGAAGCTGAGATGAAAAGATTGAGGCTCCAATTGAAGCAAACTATGGACATGTACAGTGCAGCTTGCAAAGAGGCAATCTCAGCCCAAAACAAGGCTAAAGAGATTAATCAATGGAAACTAGAGGAGACACGTAAGGTTGAGGAAGTTAGGTTGTCTAAAGAGGCAGCTCTTGCACAGGCAGAAGAGGAGAAGGCTAAAGCCAAAGCTGCCTTCAAAGCAGCTGAGGAAGCCATGAAAATGGCGGAAAAGGAAGCACAAATAAGATTGCATGCAGAGATGCAGGCTAGGAGACAGGCAGAAGAGAAGGATAAGGCATTAACTGTGTGGGCTCATAAGGATATTCCATATAGAAAATACACCATAGATGAAATTGAAACGGCTACTAAAAACTTCTCCCTATCAATGAAAATAGGTGAAGGTGGATTTGGACCTGTGTTTAAAGGCCATCTTGATCATACCGCAGTTGCAATCAAAATATTAAACCCCGAAGCATCCCAGGGAAGGAAGCAGTTCCAACAAGAGGTTGAGGTATTATGCAGCATAAGGCATCCTAATATGGTCCTCCTGCTTGGTGCATGTCCTGACTATGGATGCTTGGTGTATGAATACATGGAAAATGGTAGTTTAGAAGATAGATTATTGCGAAAAAATAACAGTCCCCCTATTCCATGGAGGAAACGTTTTGAAATAGCTGCTGAGATTGCAACTGCACTCCTTTTCCTTCACCAAACAAAGCCAGAGCCTATTGTGCACCGGGACCTTAAACCAGCAAACATACTCTTGGATCGAAATTTTGTGAGTAAAATAAGCGATGTTGGTCTTGCACGACTAGTCCCACCATCTGTAGCTGATTCTGTCACACAATATTACATGACTTCTGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTATCAACAAACAGGGAAGTTAACAACAAAATCAGATATATATTCTTTGGGGATAATGCTACTGCAGATAATCACAGTCAAGCCTCCTATGGGACTTGCTCATCATGTAAGGAGGGCAATTGAAAATGGAAGTTTTTCAGATATGCTTGATCCTGTGGTGACTGATTGGCCAGTTGAAGAGGCTCTAACATTTGCCAAACTATCATTGAAATGTGCAGAGCTTAGCAAGAAGGACAGGCCTGGTCTTGCATCAGTAATAGTGCCAGAGCTTAGTCGTTTAAGAGACTTTGGTTGCACATTGCAGAATAACTGCCACATACCACGCCCTCCTACCCCTACACGAAGACCACAATCAAAGACATAA	2121	0.4281	MSSHDGTATVNVIMVAVDKDKNSAHAFRWAMNHVDNPIIIAVHVKHKNILHQGTNVFPPDEDDVANIFDPLRQMCLRKVVKMKEAVIDDSDVVGGILEYAQRNHIPTIVVGAASSATKNTLLARSLNMRIGSKKFKGLDVSTAIIKAAPDFSSVYVISKGKIVRSRPAISPLGNVAAEPKQPFGLTHSGSENAARTQAFRRGSTNSRFERSPLHERPRISSASQSMEYIDLSISGQRSPFFSRNSSSGGSDSSRSYKFGSPDVTKQDSDLTLKSESQPSGDMEAEMKRLRLQLKQTMDMYSAACKEAISAQNKAKEINQWKLEETRKVEEVRLSKEAALAQAEEEKAKAKAAFKAAEEAMKMAEKEAQIRLHAEMQARRQAEEKDKALTVWAHKDIPYRKYTIDEIETATKNFSLSMKIGEGGFGPVFKGHLDHTAVAIKILNPEASQGRKQFQQEVEVLCSIRHPNMVLLLGACPDYGCLVYEYMENGSLEDRLLRKNNSPPIPWRKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADSVTQYYMTSAAGTFCYIDPEYQQTGKLTTKSDIYSLGIMLLQIITVKPPMGLAHHVRRAIENGSFSDMLDPVVTDWPVEEALTFAKLSLKCAELSKKDRPGLASVIVPELSRLRDFGCTLQNNCHIPRPPTPTRRPQSKT.	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g03340	706	SMART	serkin_6	413	677	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g03340	706	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	13	114	-	-
	Seca8g03340	706	MobiDBLite	consensus disorder prediction	239	278	-	-
	Seca8g03340	706	Pfam	Universal stress protein family	12	119	IPR006016	-
	Seca8g03340	706	MobiDBLite	consensus disorder prediction	184	221	-	-
	Seca8g03340	706	Coils	Coil	328	384	-	-
	Seca8g03340	706	MobiDBLite	consensus disorder prediction	185	206	-	-
	Seca8g03340	706	Pfam	Protein kinase domain	415	670	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g03340	706	Gene3D	Transferase(Phosphotransferase) domain 1	486	686	-	-
	Seca8g03340	706	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	385	485	-	-
	Seca8g03340	706	CDD	STK_N	12	160	-	-
	Seca8g03340	706	Gene3D	HUPs	3	130	IPR014729	-
	Seca8g03340	706	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	531	543	IPR008271	GO:0004672\|GO:0006468
	Seca8g03340	706	MobiDBLite	consensus disorder prediction	239	284	-	-
	Seca8g03340	706	ProSiteProfiles	Protein kinase domain profile.	413	679	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g03340	706	Gene3D	Phosphorylase Kinase; domain 1	382	485	-	-
	Seca8g03340	706	PANTHER	OS02G0152300 PROTEIN	13	685	-	-
	Seca8g03340	706	SUPERFAMILY	Protein kinase-like (PK-like)	395	672	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g03340	Seca-Chr8	95819263	95823161	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g03340	82	691	Receptor kinase-like Gene Family	AT5G12000	58.080	0.0	695

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Seca8g03340		Pkinase	5.9e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g03340	-		-	gmx:100786386	883.248