Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03338 ATGACTACTAAAAAGAGTACATGGAAGTCTGTGATCTTGATCTTAAGTTGTTACAAGATTAAATTCCCATTGGAGGAATCAGAGAAACAGGATTTAAAACAGGGTTCTTTCCATAGGCTATTGCTATCAGATATAAGCAATTCAAGCTCCTCTCAGGCAATTGAAGATCTTTCAATTTCCCTCGCTGGCTCTAAACTTTACACATTCACCCTTGAGGAGCTAAGAGAAGCAACACATAATTTCACATGGAGTAACATGCTTGGTGAAGGTGGGTTTGGACCTGTGTACAAGGGGTTTTTTGATGACAAACTTAGGCGTGGGTTGAAGGCTCAGACTGTTGCTGTGAAACGATTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAACTGAGGCATCCACATCTTGTTAAGTTAATTGGGTACTGTTATGAGGATGAACACAGGCTTTTGGTGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAGTATGTTGTTTTTCTATCTTCTACTCCTTTTCTCACACTTTCCCCAAAAAGGCAAGATAATACAAGCAGGATACTCTGCTGCCATGCCATGGTCAACCAGGATGAAAATTGCTTTGGGAGCGGCTAAGGGTCTGGCCTTCCTTCACGAAGCAGATAAACCTGTAATTTACAGGGATTTCAAAGCTTCAAACATCTTACTAGACTCAGACTATACAGCTAAACTCTCAGACTTTGGTCTAGCTAAGGATGGTCCTGAAGGAGAAGAGACACATGTAACAACAAGGATAATGGGAACACATGGCTATGCTGCTCCTGAGTACATCATGACAGGTCACCTCACAACGAAGAGTGATGTGTATAGCTACGGAGTGGTTCTGTTGGAATTGCTAACTGGAAGACGGGTAGTGGATAAGTCCCTAGCAAATCGAGGAAAGAGCTTGGTGGAATGGGCAAGGCCTATGTTGAGAGATCAGAAAAAGCTGCACCGTATCATAGACCGTAGACTTGAAGGTCAATTCCCTACAAAAGGAGCCATGAAGGTTGCTATGTTGGCTTTTAAATGCTTGAGTCACAACCCAACTCCAAGGCCTTCCATGAGTGATGTGGTGAAGGTATTGGAACCACTTCAAGACTTTGACGATGTTCTCATAGGACCATTTGTCTATGTTGCCGTAAAAGAAAATGGAGACAAAGATAAAATATAG 1230 0.4268 MTTKKSTWKSVILILSCYKIKFPLEESEKQDLKQGSFHRLLLSDISNSSSSQAIEDLSISLAGSKLYTFTLEELREATHNFTWSNMLGEGGFGPVYKGFFDDKLRRGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLVYEYMPRGSLENQLFRSMLFFYLLLLFSHFPQKGKIIQAGYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRIMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSLANRGKSLVEWARPMLRDQKKLHRIIDRRLEGQFPTKGAMKVAMLAFKCLSHNPTPRPSMSDVVKVLEPLQDFDDVLIGPFVYVAVKENGDKDKI. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03338 409 CDD STKc_IRAK 87 384 - -
Seca8g03338 409 Gene3D Phosphorylase Kinase; domain 1 43 163 - -
Seca8g03338 409 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 194 390 - -
Seca8g03338 409 Gene3D Transferase(Phosphotransferase) domain 1 189 391 - -
Seca8g03338 409 ProSiteProfiles Protein kinase domain profile. 81 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03338 409 Pfam Protein tyrosine and serine/threonine kinase 83 381 IPR001245 GO:0004672|GO:0006468
Seca8g03338 409 FunFam Serine/threonine-protein kinase BIK1 47 163 - -
Seca8g03338 409 PANTHER OS01G0588500 PROTEIN-RELATED 50 385 - -
Seca8g03338 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Seca8g03338 409 SUPERFAMILY Protein kinase-like (PK-like) 54 381 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03338 Seca-Chr8 95762728 95765620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03338 68 381 Glycoside Hydrolase AT3G07070 50.794 1.26e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca8g03338 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03338 - - gmx:100802636 667.151