Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03331 ATGGCTGGTGCTTCTTCTTCTTCTGCTGCTGATCCTCTTATTACTACTAGCGCCACCACTAACCACAATAATGAGACTTGTTCCAACAATGAAACTAGTAATAATAAGATGTACAAAGGGGTGAGGAAGAGAAAATGGGGCAAATGGGTTTCTGAGATCAGGCTTCCCAATAGCCGTGAGCGTATTTGGTTGGGCTCTTACGATACCCAAGAGAAGGCAGCCCGGGCCTTTGATGCAGCCCTTTACTGCTTACGTGGACGCCGGGCTAATTTCAATTTTCCTGACACCCCTCTCAATTTGGAGATCAATGTGGCTGTTCATCACCAATCTCTTTCCCATCAGGAAATTCAAGAGGTTGCTGCAAAGTTTGCCAATGAACCACCAATGGAGCTGACTCATGAAGAGGAAGAAGAACCGTCAGAGTCGCAACGTGGTGCCAATTCATTTGGGTCATTTGAGTCAAATAATTCTAAATCAAACGACAGCGTAACGGAGAGTACTTACCCTCATCTGTATGATTATGATGGGACCATGGATTGGACCTTTTCGGACATGTTGGATGACTTGAATAGCTCCGATTTTAGCCTCTATTCTGAGCCAGACAAGATGCAGTTCTCGGGTGAGTTATTATATTCCACTCAACCAACAGTACCGTTTTTTGAGGATAATAATGGGGGAGAAATTGAAGGTGATGATGATGCCTTCTCTAACCATTCATTCCTTTGGAGTTGGAACTTTTGA 741 0.4413 MAGASSSSAADPLITTSATTNHNNETCSNNETSNNKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGRRANFNFPDTPLNLEINVAVHHQSLSHQEIQEVAAKFANEPPMELTHEEEEEPSESQRGANSFGSFESNNSKSNDSVTESTYPHLYDYDGTMDWTFSDMLDDLNSSDFSLYSEPDKMQFSGELLYSTQPTVPFFEDNNGGEIEGDDDAFSNHSFLWSWNF. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03331 246 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Seca8g03331 246 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Seca8g03331 246 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Seca8g03331 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 192 - -
Seca8g03331 246 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Seca8g03331 246 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Seca8g03331 246 MobiDBLite consensus disorder prediction 129 164 - -
Seca8g03331 246 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Seca8g03331 246 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Seca8g03331 246 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Seca8g03331 246 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Seca8g03331 246 MobiDBLite consensus disorder prediction 1 35 - -
Seca8g03331 246 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03331 Seca-Chr8 95467911 95469114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03331 32 125 AP2-EREBP Transcription Factor Family AT1G19210 71.277 4.27e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g03331 AP2 5.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03331 - - gmx:112999363 234.958