Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03315 ATGGAATCGGAGGATTTGGTGAAACAAGAATTAGAGGAAGTATACAAACATTTGGGGAAGAAGCAAAAGTTTGAGGGCGCTGTTTCGTTTCTCAAATCCCTGCTCCAACACTCATATCCATCAGCTTCTCCCTCTCTCCGCAAATCTTTTTATTCAGTTATATGCCGAGTTGCTACTGTGTTGAAGACTAGATATACAGCACCAGGTTTCTGGAATGCTGGCCTAGACCTTTTTGAGCAGGCTTTATTGCTTGTTTCTGAACCTTCTGAGAAGGAGCACTTGAAGGCTTGCATTGCTCAGGCCAGGGAACATTTGCATCTCGAAGACAACCCATCACAGGCTTCGCAACCTGCAGAGAATCATGCAAACAGAGGATATCTTTTTGAGGGGCACCTTACGGTAGATCCAGAGCCAGCACAGCCTCAATGGTTGGTGCAGTCAAATCTCTTGGCAACAGCTGCTACACTATTTGCTGCTGAATCCTCTCATGGTTCAGCAGCAAATGGTACTACACCAGAGGATGCCTCAAATGTGCTAGAAGATCTTATGAATAGATTGGAAGAAGTTGTACCCCTGATTGTGGATGAAGGAGTTGTAGCTCCCAAAGTTCCTCCTGCAAGTAAAGAAGTTGTGGCAAAACTTCCAGTCATTACTCTCACAGAGGAAATCCTGGCTAAGATGGGGAAAGATACAGAGTGTGCAATTTGCAGGGAAAACTTGGTTTTAAATGACAAAATGCAGGAGTTACCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGGTATTGTCTTTAAGTCCACTGATTCATTGGAAATTCTTTGCCCTTCTGAAACCAACTTTATGCATTTGA 861 0.4413 MESEDLVKQELEEVYKHLGKKQKFEGAVSFLKSLLQHSYPSASPSLRKSFYSVICRVATVLKTRYTAPGFWNAGLDLFEQALLLVSEPSEKEHLKACIAQAREHLHLEDNPSQASQPAENHANRGYLFEGHLTVDPEPAQPQWLVQSNLLATAATLFAAESSHGSAANGTTPEDASNVLEDLMNRLEEVVPLIVDEGVVAPKVPPASKEVVAKLPVITLTEEILAKMGKDTECAICRENLVLNDKMQELPCKHTFHPPCLKPWLVLSLSPLIHWKFFALLKPTLCI. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03315 286 SUPERFAMILY RING/U-box 227 268 - -
Seca8g03315 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 269 IPR013083 -
Seca8g03315 286 Pfam Ring finger domain 232 264 IPR001841 -
Seca8g03315 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03315 Seca-Chr8 94952452 94955308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03315 7 264 C3H Transcription Factor Family AT5G20910 58.527 1.02e-102 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03315 K16274 - gmx:100798732 454.521