Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03308 ATGGTTTGTGAGATGGAGAGTGACTGTATTGAGGTTGAGGACATGGAGATTGAAGTCCTCCCTTCAATGTGGCCTGAAGATGTTGGCACTGATGTTGGAAAACAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGATATGTTAGAGGAGGTTACAATCTTAGAGGAGCCAACTATAGCTGATTTTCAGCGTCTCATGGAACTTACAAATTATACAGATAAAGGGTCTTCTCAGTTGGCTTATCTTATGAAACATTGGGAGTATAAGCAGGCCAATGCTGTGCGTCTTCTCAGGGAAGAGCTTGATAACCTTAGCAAGCAAAGGCAGGAAGTTGAGCTTAGAAAGTTGGAGATACTGAAAGACAATCGATTTGAGGAGGAAAATTATGGGGGTGATAAACGCCCGGTTTCTATATTGGATGAAGTTTACTATACATGGCAAGATGTACCTGTACCACTGAGGAAAAGTGATGTTGTTGTTCAAAACAAGAGAGTTGAAATTGATGCTGAGTATGATACTGTTGTGTACTGGAAACAGCGGGCTATGGATTTTGAAAGACAGTTGGAGGCAAGTATTCAGAGAGAGCAGATACTTGTGGAGAAGTTGCAAGAAAGTATAAAGAATTTTGAAAGGCAGTCATCACCTGTGGAAGAACTCTCGCAGATTCTGAAGAGGGCTGATAATTTCTTACATTTTATACTTCAGAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAATTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACGGATGTTGAAATTTTCACAGGATCTGGTGTTAAGGAATCTCAAGATTTTAAGAGAGAAGTGATGGAGAAAGGGATACCTGCAAAAAAGGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAGACATTCTTGATATATGTAGAACCTGTCTTTAGCAAGGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTGAGGGAAGAGATTGCAGTTCAGAAAGCCAAGGAAACTGAACTTAATAAGACCATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCGGGAGCAAAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGCTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGAAATGTGGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCGGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTACGTTGTTCCAGAACCACCTTTTGCTAAAGCAGAAGAAGGCCATCAAAAGATGACCACAGACCAGTCAACTATAGCAGCCAATGGGGTGAAGGAAGATAAACATCAGTTAACACCTCGAAGTAGATGTGATCAAAATCTTGATGGTAAAAAACACAATGATCATATTCCCACCCAAAATCATGCATTCAATGATGAATGTAGGTCTTCAGTTAACAGTGAATGCTCAACAAATGGAGATACCGATGAGGGAACTCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGAATTGGAATACCAGAAAAGGCTATACCAACTTTATTCAGAAGATACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGCTAATGGGTGGTCGTCTAACAGTGTCTAGCAAAGAACATTGTGGTTCTACCTTCACCTTCATACTTCCATACAAGGTTTCAACCACTTGTGATAATTCTGATGACCCTGATGAGCTTTCAGATGTGGATAATAATGAAGATGATACAACAGAGGGCTTCTTCCAATTCCAGCCACGCACTTTGGGCTCTCTGTTCTCTTCTAATGGATCTAGCAGGCCCCAAAATTTATTACCAGGCTACAGAAGCTCACATAAGTTTAATGGGTTTTCAGAGAATTCTTACTCATTCCCCTCTACTAACATAGGATCAAAAGGGACAAATTCAGTTGAGGATGCATCTTCAGCTATTGTTGATGCTCCAGAGATGTCTGAATCAACAAGTTCATCATGTTACAGCCCAGAAACAAAGGATGAAACTTTAGTTAATAGAAACAAACAAAACCAAGATAAGGCACATGCTCGGTTACAGAATGGCAGTGTAGATTCTTGTCAACTTAAGAAGGCAAGTAGAGAAATGAATGCAGCAACAACGTTAAGTGAACCAATGCAAACATGTCAGGGTCAAGGGAAGGCAGACATAGCTTCCCAATGTGTTATTAGAAGTAGTAACACTAGCATGTCCTCAGAAGTAACCACATCCACGTTAAAGCCAAAGATTCTTCTTGTTGAAGATAACAAAATCAATGTCATGGTGACACAGTCAATGATGAAGCGGTTAGGTTATAGTATGGATGTTGTGAATAATGGAGTGGAAGCCTTGCGTGCAGTTCAGCGCCATACTTATGATGTCATTCTGATGGATGTTTTCATGCCAGTTATGAATGGTCTTCAAACAACAAAATTGATTCGGTCTTATGAGGAAACGGGCAATTGGGATGCTGCAAGAAAATCTGGAATTGAACTAAGTTTATCAGCATCAGAGGAATGTTCTGTAGCACCAAAAAAACGGATCCACATTATCGCGATGACAGCAAATACAATGTCAGAGAGTGCTGAAGAATGTTTTGCAAATGGAATGGATTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGATTGTCTGGAACAGTACCTAAGGTGA 3060 0.4003 MVCEMESDCIEVEDMEIEVLPSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRQEVELRKLEILKDNRFEEENYGGDKRPVSILDEVYYTWQDVPVPLRKSDVVVQNKRVEIDAEYDTVVYWKQRAMDFERQLEASIQREQILVEKLQESIKNFERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGIPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVVPEPPFAKAEEGHQKMTTDQSTIAANGVKEDKHQLTPRSRCDQNLDGKKHNDHIPTQNHAFNDECRSSVNSECSTNGDTDEGTHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTTCDNSDDPDELSDVDNNEDDTTEGFFQFQPRTLGSLFSSNGSSRPQNLLPGYRSSHKFNGFSENSYSFPSTNIGSKGTNSVEDASSAIVDAPEMSESTSSSCYSPETKDETLVNRNKQNQDKAHARLQNGSVDSCQLKKASREMNAATTLSEPMQTCQGQGKADIASQCVIRSSNTSMSSEVTTSTLKPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEALRAVQRHTYDVILMDVFMPVMNGLQTTKLIRSYEETGNWDAARKSGIELSLSASEECSVAPKKRIHIIAMTANTMSESAEECFANGMDSFVSKPVTFQKLKDCLEQYLR. 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03308 1019 Coils Coil 185 212 - -
Seca8g03308 1019 CDD HisKA 374 436 IPR003661 GO:0000155|GO:0007165
Seca8g03308 1019 PRINTS Bacterial sensor protein C-terminal signature 668 681 IPR004358 GO:0016310|GO:0016772
Seca8g03308 1019 PRINTS Bacterial sensor protein C-terminal signature 609 623 IPR004358 GO:0016310|GO:0016772
Seca8g03308 1019 PRINTS Bacterial sensor protein C-terminal signature 644 662 IPR004358 GO:0016310|GO:0016772
Seca8g03308 1019 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 17 1018 - -
Seca8g03308 1019 MobiDBLite consensus disorder prediction 775 795 - -
Seca8g03308 1019 FunFam Histidine kinase 5 217 352 - -
Seca8g03308 1019 SUPERFAMILY CheY-like 875 1019 IPR011006 -
Seca8g03308 1019 MobiDBLite consensus disorder prediction 690 709 - -
Seca8g03308 1019 Coils Coil 346 366 - -
Seca8g03308 1019 SMART REC_2 875 1014 IPR001789 GO:0000160
Seca8g03308 1019 ProSiteProfiles Response regulatory domain profile. 876 1018 IPR001789 GO:0000160
Seca8g03308 1019 MobiDBLite consensus disorder prediction 541 601 - -
Seca8g03308 1019 SMART HKATPase_4 486 684 IPR003594 -
Seca8g03308 1019 Coils Coil 94 121 - -
Seca8g03308 1019 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 462 681 IPR036890 -
Seca8g03308 1019 MobiDBLite consensus disorder prediction 692 706 - -
Seca8g03308 1019 MobiDBLite consensus disorder prediction 548 576 - -
Seca8g03308 1019 Pfam Response regulator receiver domain 877 945 IPR001789 GO:0000160
Seca8g03308 1019 Gene3D - 441 689 IPR036890 -
Seca8g03308 1019 ProSiteProfiles Histidine kinase domain profile. 382 684 IPR005467 -
Seca8g03308 1019 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 374 440 IPR036097 GO:0000155|GO:0007165
Seca8g03308 1019 CDD HATPase_EvgS-ArcB-TorS-like 491 681 - -
Seca8g03308 1019 SMART HisKA_10 375 440 IPR003661 GO:0000155|GO:0007165
Seca8g03308 1019 MobiDBLite consensus disorder prediction 577 601 - -
Seca8g03308 1019 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 682 IPR003594 -
Seca8g03308 1019 Gene3D PAS domain 217 352 - -
Seca8g03308 1019 FunFam Putative histidine kinase 5 363 440 - -
Seca8g03308 1019 Pfam His Kinase A (phospho-acceptor) domain 377 440 IPR003661 GO:0000155|GO:0007165
Seca8g03308 1019 FunFam Probable histidine kinase 1 565 687 - -
Seca8g03308 1019 Gene3D - 363 440 - -
Seca8g03308 1019 FunFam Histidine kinase 5 869 1019 - -
Seca8g03308 1019 CDD REC_hyHK_CKI1_RcsC-like 877 1014 - -
Seca8g03308 1019 Gene3D - 869 1019 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03308 Seca-Chr8 94748096 94755395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03308 1 1018 Histidine Kinase Gene Family AT5G10720 56.159 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g03308 HATPase_c 6.4e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03308 - - gmx:100801640 1757.65