Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03299 ATGGCCTCCAAGTTATGCGATTCCTGCAAATCAGCGACAGCCACCTTGTTCTGCCGCCCTGACTCTGCCTTCCTCTGTCTCCCCTGCGACGCCAAAATCCACGCCGCCAACAAGCTCGCCTCCCGCCACCCTCGCGTCTCCCTCTGCGAAGTCTGCGAGCAAGCCCCCGCTCACGTCACCTGCAAGGCCGACGCTGCCGCCCTCTGCCTCTCCTGCGACCACGACATCCACTCCGCCAACCCCCTCGCCCGCCGCCATGAACGCGTCCCTGTCACCCCCTTCTACCACCACCACCCCTCCGTTAACGACCACCACCCTTACTTCTCTGACCCTGACCATGCTGATGCTGACGTCACCACTGATGAAGCCGAAGCCGCTTCCTGGCTCCTTCCTACTCCTTCCAACCCTAAAGGCCCCGATCTCAACTCTGCTTGTCACTACTCCTTCCCTGAAATCGACCTCGACTTCGTCTCGGTCGATCCCAAAATGGAATCGCCGGACCATAACAGCACCGCCACCGCCGATGGAGTCGTTCCGGTGCAATCTCAGAGCAAGACCACCACCACTGAACACTACTACGACAACATCGATTTCCCTACTTCCAAGCCTTTTGCTTACAATTACAACGCCAAGTCGCAGCAGTGCGTGAGCTTGAGCCACAGCGTATCATCTCCGTCGATGGAAGTTGGCGTTGTGCCGGACGGGAACGCGATGTCGGATATATCGTACTGCTGCTACAGCAAGGCGGCGACGGCGACGGAGGCGTTGCAGATCTCGGCGGCGGATAGGGAAGCTAGGGTTTTGAGGTACAGGGAGAAGAGGAAGAATAGAAGGTTCGAGAAGACCATTCGTTACGCTTCTAGGAAAGCGTATGCGGAAACCAGACCCAGGATCAAAGGCAGGTTCGCCAAGCGCACTGATGCGAACTTACTCGCCGAGGAGGATCCGTTTTCTGGATACGGCGTCGTTCCCACCTGTTTGTAG 984 0.5803 MASKLCDSCKSATATLFCRPDSAFLCLPCDAKIHAANKLASRHPRVSLCEVCEQAPAHVTCKADAAALCLSCDHDIHSANPLARRHERVPVTPFYHHHPSVNDHHPYFSDPDHADADVTTDEAEAASWLLPTPSNPKGPDLNSACHYSFPEIDLDFVSVDPKMESPDHNSTATADGVVPVQSQSKTTTTEHYYDNIDFPTSKPFAYNYNAKSQQCVSLSHSVSSPSMEVGVVPDGNAMSDISYCCYSKAATATEALQISAADREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDANLLAEEDPFSGYGVVPTCL. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03299 327 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 312 IPR045281 GO:0009909
Seca8g03299 327 CDD Bbox1_BBX-like 5 48 - -
Seca8g03299 327 ProSiteProfiles CCT domain profile. 263 305 IPR010402 GO:0005515
Seca8g03299 327 SMART bboxneu5 49 91 IPR000315 GO:0008270
Seca8g03299 327 SMART bboxneu5 1 48 IPR000315 GO:0008270
Seca8g03299 327 Pfam CCT motif 263 305 IPR010402 GO:0005515
Seca8g03299 327 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Seca8g03299 327 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Seca8g03299 327 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Seca8g03299 327 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Seca8g03299 327 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03299 Seca-Chr8 94515177 94517104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03299 1 325 C2C2-CO-like Transcription Factor Family AT5G24930 54.324 3.54e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca8g03299 zf-B_box 8.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03299 - - cam:101512206 469.159