Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03289 ATGGAAATGTTCTTCAAGGAGTTCCCTCACCCATATGACAAGCAAAGGAAAGCCCTGGGCGATGATGAGCTTGGGCTAGACCCTTTGCAAACCAAGTTTTGGTTCCAGAATAAGCCTACCCAAATGAAGGCTCAACAAGAACGCCATGAGAATGCTCTTCTGAAGGCTGAGAACGAAAAGCTTCGTGCTGACAATGCTAGGTACAAGGAGGCACTTAGTCATGCTACATGCCCTACCTGTGGAGGGCCCTCTGTTGGTGAAATGTCCTTTGACAAACAACACTTGAGGATTGAGAATGCCCGATTAAGAGAAGAGGTATATATAATATATCTTTCTTAA 339 0.4484 MEMFFKEFPHPYDKQRKALGDDELGLDPLQTKFWFQNKPTQMKAQQERHENALLKAENEKLRADNARYKEALSHATCPTCGGPSVGEMSFDKQHLRIENARLREEVYIIYLS. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03289 112 CDD homeodomain 1 38 IPR001356 GO:0003677
Seca8g03289 112 SUPERFAMILY Homeodomain-like 2 51 IPR009057 -
Seca8g03289 112 Pfam Homeodomain 1 43 IPR001356 GO:0003677
Seca8g03289 112 ProSiteProfiles 'Homeobox' domain profile. 1 45 IPR001356 GO:0003677
Seca8g03289 112 Coils Coil 42 71 - -
Seca8g03289 112 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 106 IPR042160 -
Seca8g03289 112 Gene3D - 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03289 Seca-Chr8 94367677 94368222 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03289 1 106 Homeobox Transcription Factor Family AT4G04890 74.766 4.12e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca8g03289 Homeodomain 2.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03289 K09338 - tcc:18597106 173.326