Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03283 ATGGAAATGTTCTTCAAGGAGTGCCCTCACCCATATGACAAGCAAAGGAAAGCCCTGGGCGATGAGGTTGGGCTCGACCCTTTGCAAATCAAGTTTTGGTTCCAGAATAAGCGTACCCAAATGAAGGCTCAACAAGAACGCCAAGAGAATGCTCTTCTGAAGGCTGAGAACGAAAAGCTCTGTGCTGACAATGCTAGGTTCAAGGAGGCACTGAGTCATGCTACATGCCCTACCTGTGGAGGGCCCTCTGTTGGTGAAATGTCCTTTGACGAACAACACTTGAGGATTGAGAATGCTCGATTAAGAGAAGAGGTATATATAATATATCTTTCTTAA 336 0.4554 MEMFFKECPHPYDKQRKALGDEVGLDPLQIKFWFQNKRTQMKAQQERQENALLKAENEKLCADNARFKEALSHATCPTCGGPSVGEMSFDEQHLRIENARLREEVYIIYLS. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03283 111 SMART HOX_1 1 48 IPR001356 GO:0003677
Seca8g03283 111 Coils Coil 36 63 - -
Seca8g03283 111 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 105 IPR042160 -
Seca8g03283 111 ProSiteProfiles 'Homeobox' domain profile. 1 44 IPR001356 GO:0003677
Seca8g03283 111 Pfam Homeodomain 1 42 IPR001356 GO:0003677
Seca8g03283 111 Gene3D - 1 61 - -
Seca8g03283 111 SUPERFAMILY Homeodomain-like 1 50 IPR009057 -
Seca8g03283 111 CDD homeodomain 1 45 IPR001356 GO:0003677
Seca8g03283 111 FunFam Homeobox-leucine zipper protein HDG1 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03283 Seca-Chr8 94305952 94306493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03283 1 105 Homeobox Transcription Factor Family AT4G21750 74.528 5.05e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca8g03283 Homeodomain 3.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03283 K09338 - tcc:18597106 178.718