Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03266 ATGGAGGAGATGAAGGCGAACATTCTATTTGGCAAGTATGAGATGGGAAGGCTCCTAGGCAAAGGAACATTCGCGAAGGTGTACTACGGCAAAGAAATTGCAACAGGTGAAGGAGTAGCAATCAAAGTGATCAGCAAAGACAAAGTGAGAAAAGAAGGCATGATGGAGCAAATTAAACGCGAAATATCAGTTATGCGGTTAGTGAGGCACCCAAACATCGTGAACCTGAAAGAAGTTATGGCCACAAAGACCAAAATCCTGTTCGTGATGGAGTACATACGTGGCGGCGAGCTATTCGCCAAGGTGGAAAAGGGAAAACTCAGCGAAGATCTCACCCGCAAGTATTTCCAACAATTAATCAGCGCCGTTGATTACTGTCACAGCAGAGGAGTCTCTCACCGTGATCTCAAGCCAGAAAATCTGTTACTCGATGAGAACGGGAATCTCAAAGTCTCTGATTTTGGCCTCTCTGCTTTACCAGAACAGCTTAGGCAAGACGGGCTTCTCCACACGCAGTGTGGGACCCCAGCATACGTTGCCCCTGAAGTGTTGAGAAAAAGAGGATACGATGGATTCAAAGCTGATACATGGTCTTGTGGTGTTATTCTATATGCTTTGCTTGCAGGATTCCTTCCCTTCAGGCACGAGAATCTCATGACTATGTATAACAAGGTTTTGAAAGCAGAGTACCAGTTTCCTCCATGGTTTTCACCAGAATCAAAGAGGTTGATCTCGAAGATTCTAGTAGCTGATCCACAGAGACGAATCACAATCCCTTCAATCATGAGTGTTCCTTGGTTCCAGAAAGGGTTCATAACTACTCCAATTGATTTTAATTCTCAATTATCATCACAAGAACCAACAACAACGGTTTCTTCAGAATCACTCGAGGTGTCTTCTAATAGCGACAAAATTGCTGTTTCATCGCCGAAATTCTTCAACGCTTTTGAGTTCATTTCCTCGATGTCTTCCGGGTTCGATCTTTCTGGTTTGTTTGAGGAAAAGAGGAAAAAAGGCTCGGTGTTCACTTCAAAGTGTTCGGCTATGGAGATTGCGTCCAAGATTGAAGGTGCGGCGAAAGGGTTGAGTTTCAAGGTGGCGAAGTTGAAGGACTTCAAGCTGAGGCTGCAAGGGAACTCAGTGGGAAGAAAAGGGAGGTTGGCCGTCACGGCGGAGATATCGGAGGTTGCGCCGGAACTTGCGGTGGTGGAGTTTTCGAAGTGCTCCGGCGACACGTTGGAATATGTGAAGTTTTGTGAAGAGGAAGTTAGACCGGCGCTGAAAGATATTGTGTGGACGTGGCAGGGTGAGTAA 1314 0.4589 MEEMKANILFGKYEMGRLLGKGTFAKVYYGKEIATGEGVAIKVISKDKVRKEGMMEQIKREISVMRLVRHPNIVNLKEVMATKTKILFVMEYIRGGELFAKVEKGKLSEDLTRKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRQDGLLHTQCGTPAYVAPEVLRKRGYDGFKADTWSCGVILYALLAGFLPFRHENLMTMYNKVLKAEYQFPPWFSPESKRLISKILVADPQRRITIPSIMSVPWFQKGFITTPIDFNSQLSSQEPTTTVSSESLEVSSNSDKIAVSSPKFFNAFEFISSMSSGFDLSGLFEEKRKKGSVFTSKCSAMEIASKIEGAAKGLSFKVAKLKDFKLRLQGNSVGRKGRLAVTAEISEVAPELAVVEFSKCSGDTLEYVKFCEEEVRPALKDIVWTWQGE. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03266 437 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Seca8g03266 437 Pfam NAF domain 310 368 IPR004041 GO:0007165
Seca8g03266 437 CDD CIPK_C 314 428 - -
Seca8g03266 437 ProSiteProfiles NAF domain profile. 308 333 IPR018451 GO:0007165
Seca8g03266 437 SUPERFAMILY Protein kinase-like (PK-like) 9 314 IPR011009 -
Seca8g03266 437 FunFam Non-specific serine/threonine protein kinase 308 432 - -
Seca8g03266 437 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03266 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Seca8g03266 437 CDD STKc_SnRK3 12 266 - -
Seca8g03266 437 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03266 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 428 - -
Seca8g03266 437 Gene3D Kinase associated domain 1, KA1 308 433 - -
Seca8g03266 437 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Seca8g03266 437 Gene3D Transferase(Phosphotransferase) domain 1 93 272 - -
Seca8g03266 437 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Seca8g03266 437 FunFam Non-specific serine/threonine protein kinase 6 306 - -
Seca8g03266 437 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03266 Seca-Chr8 93904385 93905698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03266 2 437 CBL-interacting serine-threonine protein kinases AT5G25110 69.021 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca8g03266 Pkinase 2.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03266 - - tcc:18587713 672.159