Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03258 ATGGATGAAAAGGGAGAAACTCTTCAAGCAGAGTTACAACATGTGAGAGAGGAGAACAATACCCTAAGACTGATGCTTGAAATTCTGAGCAGAAAGTGCACAAAGCTTGAGTCACATCTTCAAGAGATCAAGGCAGAACATAAGGGTATGATCAGTTCAAATCAAATTGGGTCAGTACCTAACCTTGAAACAAGCAAAAAAGCCAGACTAGAAATTCCCACAGCAAAAAAGCCATTACAAATCTTTGTCAGAACCCACCCCAATGATGATAGTTTGATAATAAAAGATGGCCATCAATGGAGGAAGTATGGGCAAAAGGTTACCAAAGATAATGCTTCTCCTAGAGCTTACTTCAGGTGCTCCATGGCTCCCAGTTGCCCAGCCAAGAAGAAGGTGCAAAGATGCATACATGATAGGTCTATCCTTGTAGCAACTTATGATGGAGAGCACAACCATGGTGCCCTTCATGAGTCATTCAGACCATCTTCATCATCCACACCTAAAGGCTCATCAATGGCTAATAAGTTACCTCCAACAATCATACCAAGTGACAAAGAAGCCATGAACATTGACTATGCTGGTTCTGGTTGGGCTCAAACTGATACTAGACTTTGTGAGGAGGATGTTATGCAACAGCGTGACCATGGCACCACCAACATCAAAATTGAAGAATATGTGAGTTCTCTAATCAAAGATCCTGACTTCACAGTAACATTAGCTGAAGCAGTTGCTCGCACCATCACTGGTCAACATGAGCAACAAGGTCTAAACCTCAATTTGGCTATTCCAGAAGAGTGA 798 0.4211 MDEKGETLQAELQHVREENNTLRLMLEILSRKCTKLESHLQEIKAEHKGMISSNQIGSVPNLETSKKARLEIPTAKKPLQIFVRTHPNDDSLIIKDGHQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQRCIHDRSILVATYDGEHNHGALHESFRPSSSSTPKGSSMANKLPPTIIPSDKEAMNIDYAGSGWAQTDTRLCEEDVMQQRDHGTTNIKIEEYVSSLIKDPDFTVTLAEAVARTITGQHEQQGLNLNLAIPEE. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03258 265 Gene3D WRKY domain 80 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g03258 265 SUPERFAMILY WRKY DNA-binding domain 90 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g03258 265 SMART WRKY_cls 94 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g03258 265 Coils Coil 12 46 - -
Seca8g03258 265 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 6 252 IPR044810 GO:0003700
Seca8g03258 265 ProSiteProfiles WRKY domain profile. 89 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g03258 265 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03258 Seca-Chr8 93478149 93480163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03258 66 255 WRKY Transcription Factor Family AT1G80840 40.500 2.26e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g03258 WRKY 2.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03258 - - ccaj:109791737 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03258 8 93478149 93480163 Seca4g01073 4 17365628 17367835 PCT