Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03243 ATGCTTAAAGAAATTAAACTATGCTTATTTGTTTTAATTCAGATTCAGATAGGAATGGGAACAAATCTCAGCATTCCCAAAACTGAAAAGTTTTCTGAAGATGGTGAAAATGAGCATCTTAGATATGGCTTATCATCTATGCAAGGGTGGCGTGCAACAATGGAAGATGCAGTAAATACTTTTAATGACACTGGTTTATGGATCAGCAGGTTACTTCTTGCAAATGAACATGGAATTGTGTTTTTGGGAAATGATCTGTTCGTTTTGCATGCTGCACATCTTGATCTGGATGCATCCACTTCGTTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCTAAATATCTTCACCAACAGGTACTTAGGAGTGAAGCATACACAGCTGGAGATGTTGGAACCTCTCTTCAGAAAGCATTTTTCAGAATGGACGAGATGATGCGTGGCCAAAGGGGATGGAGGGAATTAGCGGTCTTGGGTGATAAGATAAACAAGTTTAATGGAATGGTAGAAGGATTGATTTGGTCCCCACGAAGCAGTGATAGTAAGAAGGACCAAGGTGATGGTTGGGCCTTTGAGGAGGGGCCTCATTCTGATTTTGCTGGACCAACTTCAGGAAGTACTGCCTGTGTTGCGATCATTAGAGACAACGAACTTTTTGTAGCAAATGCTGGTGATTCACGCTGTGTAATATCTAGGAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCATGCAGGACGAGTTAATGGGAGTTTAAATCTAGCAAGAGCTATAGGTGACATGGAATTTAAGAAGAATAGATTTCTTTCTGCTGAAAAACAAATAGTGACTGCCAATCCAGATATAAACATTGTTGACCTTTGTGATGAAGATGAATTTTTAGTGCTAGCTTGTGATGGCATATGGGATTGCATGTCAAGCCAACAATTGGTAGATTTTGTACGTCAAGAACTGCTTATGGAAACAAAACTTTCTGCTGTTTGTGAAAGAATATTAGATCGGTGTTTGGCACCATCAATTGCTGTTGGTGAGGGATGTGATAACATGACCATGATCTTGGTTCAGTTCAAAAAACCAGTACAGTCCAATGCACCAGCTCAAGAGCAATCCTCTTCAAATGAAGCAAGACTGGAGAGTAGTGCAAGTTAA 1221 0.3989 MLKEIKLCLFVLIQIQIGMGTNLSIPKTEKFSEDGENEHLRYGLSSMQGWRATMEDAVNTFNDTGLWISRLLLANEHGIVFLGNDLFVLHAAHLDLDASTSFFGVYDGHGGKVVAKFCAKYLHQQVLRSEAYTAGDVGTSLQKAFFRMDEMMRGQRGWRELAVLGDKINKFNGMVEGLIWSPRSSDSKKDQGDGWAFEEGPHSDFAGPTSGSTACVAIIRDNELFVANAGDSRCVISRKGQAYNLSRDHKPDLEIEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKKNRFLSAEKQIVTANPDINIVDLCDEDEFLVLACDGIWDCMSSQQLVDFVRQELLMETKLSAVCERILDRCLAPSIAVGEGCDNMTMILVQFKKPVQSNAPAQEQSSSNEARLESSAS. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03243 406 ProSitePatterns PPM-type phosphatase domain signature. 102 110 IPR000222 GO:0043169
Seca8g03243 406 Gene3D - 18 381 IPR036457 -
Seca8g03243 406 MobiDBLite consensus disorder prediction 385 406 - -
Seca8g03243 406 Pfam Protein phosphatase 2C 207 362 IPR001932 -
Seca8g03243 406 Pfam Protein phosphatase 2C 43 153 IPR001932 -
Seca8g03243 406 CDD PP2Cc 41 380 IPR001932 -
Seca8g03243 406 SMART PP2C_4 31 378 IPR001932 -
Seca8g03243 406 PANTHER PROTEIN PHOSPHATASE 2C 35 379 IPR015655 GO:0004722|GO:0006470
Seca8g03243 406 SUPERFAMILY PP2C-like 22 381 IPR036457 -
Seca8g03243 406 ProSiteProfiles PPM-type phosphatase domain profile. 41 380 IPR001932 -
Seca8g03243 406 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03243 Seca-Chr8 93040624 93051376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03243 19 392 PP2C-type Phosphatase Gene Family AT2G25070 70.588 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03243 K17499 - gmx:100793667 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03243 8 93040624 93051376 Seca8g03243 8 93040624 93051376 ECH
Seca8g03243 8 93040624 93051376 Seca4g01095 4 17564775 17571963 PCT