Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03235 ATGCAATACGAGGGTGATGGAAGAGCCAGCAACGGTTCCATAGACCTTAACAAAGTGAGTTACCTTTTCCGTGTAGGAAGAGCCATCTACGGTGAACCACTTCACTTATGGGACTCATCTTCGAGGATTCTCACGGACTTCACCACGCGCTTCACCTTCACAATTGATAAGGTAAACGACACGTCGTACGGCGATGGCTTTGTGTTCTATTTAGCTCCTGTAGGTTACCAAATTCCGCCAAACTCAGCTGGTGGCGTTTTTGGAATATTAAACGCCACCACCAACAGCGACCCTCAAAACCATGTGTTTGCCGTAGAGTTTGACACCTTTGTGGGCTCCATTGACCCACCAATGAAGCATGTGGGAATAGACGACAATTCTCTCACGTCCGTCGCTTTTGCCAAGTTCGACATTGATAGAAACCTCGGTAAACCCTGTCTCGCTTTGATTACTTACACTGCTTCCACCAAAACGCTCGCCGTTTCTTGGTCCTTTGACGGAAGAATCAAAACAAACGATCCCAATTCTTCTATTTCTTACCAAATTGACCTTATGCAAATCCTACCTGAATGGGTGAATATTGGGTTTTCAGCTTCAACTGGGCTTTCAACTGAAAGAAACGTTATCCATTCATGGGAGTTCAGTTCAACTCTGAATTCCACTGGCAGCAAAAAATCTAACACGGTTGTGCTTGTTGTTGCTGTTGTTTGTCCTATGATTTTGGTGTTTGTTGCTGCGAGTGTTGTGTTGTTAATAATGAGGAAGAGAAGAGAGAATCTTTATGAGGGTGATGATGAGTATGGAGGAGCCATGTCAGAGAAGTTTGATTTGGATAAAGCAACTATACCTAGAAGATTTGATTATGAGGAATTAGTTGAAGCCACCAATGGGTTTGCAGATGATAGAAGATTGGGAAGAGGTGGGTTTGGTGAGGTTTATAAAGGTACTTTGAGTTGTTTAGGAAGAGTTGTTGCTGTGAAAAGGATCTTTGCTGACTTTGAGAATTCAGAGAGAGTTTTCACCAATGAGGTTAGGATTATAAGCCGTTTGATACATCGAAACTTGGTTCAATTCATTGGGTGGTGTCATGAGCAAGAAGAGTTTTTGCTTGTTTTTGAGTACATGCCCAATGGAAGCCTTGACAGTCATCTTTTTGGGGACAAGAGAACTCTGGCGTGGGAAGTGAGGTATAAGGTGGCTTTAGGTGTGGTCAATGCACTTCATTATCTTCATGAAGATGCAGAGCAGTGTGTTCTTCATAGGGATATTAAGTCTGCTAATGTGTTGTTGGACAATGATTTCAGCACCAAGCTTGGGGATTTTGGGATGGCAAAGTTGGTGGATCCAAGATTGAGGACTCAGAGGACAGGGGTGGTTGGGACATATGGGTATCTGGCCCCTGAATATCTCAATGGAGGGAGGGCTAGTAAGGGATCAGATATGTATAGTTTTGGGATTGTGGCTTTGGAGATTGCAAGTGGAAGGAGGACTTATCAGGATGGGGAGTTTCATGTGCCTCTGTTGAATTGGGTGTGGCATCTCTATGTAGAAGGGAATATCCTGGGTGCTGCTGATAAGAGATTGAAGGAGGAGTTTAATGTGAATGAAATGAAAAGCTTGCTCATTGTGGGGTTGTGGTGTACCCACCCAAATGATAAGGAAAGACCCAAAGCAGCACAAGTAATCAAGGTTCTTCAGCTTGAAGCTCCACTACCAGAACTTCCACTTGATATGCATGATCGTCTTCCTCTTCCACCTCCTCCACCACCGATTAGTCAGCCCAATTATTCCTCTCAATCACCACCCATCACTAACAGCCTTGTTAGTGTTGGACGTTAG 1839 0.4399 MQYEGDGRASNGSIDLNKVSYLFRVGRAIYGEPLHLWDSSSRILTDFTTRFTFTIDKVNDTSYGDGFVFYLAPVGYQIPPNSAGGVFGILNATTNSDPQNHVFAVEFDTFVGSIDPPMKHVGIDDNSLTSVAFAKFDIDRNLGKPCLALITYTASTKTLAVSWSFDGRIKTNDPNSSISYQIDLMQILPEWVNIGFSASTGLSTERNVIHSWEFSSTLNSTGSKKSNTVVLVVAVVCPMILVFVAASVVLLIMRKRRENLYEGDDEYGGAMSEKFDLDKATIPRRFDYEELVEATNGFADDRRLGRGGFGEVYKGTLSCLGRVVAVKRIFADFENSERVFTNEVRIISRLIHRNLVQFIGWCHEQEEFLLVFEYMPNGSLDSHLFGDKRTLAWEVRYKVALGVVNALHYLHEDAEQCVLHRDIKSANVLLDNDFSTKLGDFGMAKLVDPRLRTQRTGVVGTYGYLAPEYLNGGRASKGSDMYSFGIVALEIASGRRTYQDGEFHVPLLNWVWHLYVEGNILGAADKRLKEEFNVNEMKSLLIVGLWCTHPNDKERPKAAQVIKVLQLEAPLPELPLDMHDRLPLPPPPPPISQPNYSSQSPPITNSLVSVGR. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03235 612 ProSitePatterns Legume lectins alpha-chain signature. 188 197 IPR000985 -
Seca8g03235 612 Gene3D Phosphorylase Kinase; domain 1 271 374 - -
Seca8g03235 612 PANTHER - 24 569 - -
Seca8g03235 612 CDD lectin_legume_LecRK_Arcelin_ConA 1 218 IPR001220 GO:0030246
Seca8g03235 612 Gene3D Transferase(Phosphotransferase) domain 1 375 570 - -
Seca8g03235 612 FunFam L-type lectin-domain containing receptor kinase IX.1 283 374 - -
Seca8g03235 612 SUPERFAMILY Protein kinase-like (PK-like) 282 591 IPR011009 -
Seca8g03235 612 Pfam Protein kinase domain 299 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03235 612 FunFam L-type lectin-domain containing receptor kinase IX.1 375 575 - -
Seca8g03235 612 MobiDBLite consensus disorder prediction 576 612 - -
Seca8g03235 612 CDD STKc_IRAK 304 566 - -
Seca8g03235 612 Pfam Legume lectin domain 2 225 IPR001220 GO:0030246
Seca8g03235 612 ProSiteProfiles Protein kinase domain profile. 298 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03235 612 MobiDBLite consensus disorder prediction 597 612 - -
Seca8g03235 612 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 218 IPR013320 -
Seca8g03235 612 Gene3D - 1 233 - -
Seca8g03235 612 SMART serkin_6 298 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03235 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Seca8g03235 612 ProSitePatterns Protein kinases ATP-binding region signature. 304 327 IPR017441 GO:0005524
Seca8g03235 612 MobiDBLite consensus disorder prediction 579 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03235 Seca-Chr8 92723823 92725682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03235 1 578 Receptor kinase-like Gene Family AT5G10530 46.296 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca8g03235 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03235 - - vun:114193012 912.524