Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03229 ATGGCTGGTAGAGGCACTTTTGCAGAGATCATAGATGGTGAAGTTTTCAAATTCTACGCAGATGGCCAGTGGAACAAATCCAACTCTGCAAAATCTGTTCCCATCATCAATCCAACCACCAGGAAGACCCACTTCAAGGTTCAAGCTTGTACCCAGGAAGAGGTTAACAGGGTCATAGAATCAGCAAAAACAGCTCAAAAATCGTGGGCCAAGACTCCACTGTGGAAAAGAGCAGAGTTGCTTCACAAGGCTGCAGCAATACTGAAGGAGCACAAAGTACCCATTGCCGAGTGCCTTGTTAAGGAGATTGCAAAGCCAGCTAAAGATGCTGTCACTGAAGTTGTCAGATCAGGGGATTTGGTTTCATATTGTGCTGAGGAAGGGGTGAGAATTCTTGGGGAAGGAAAATTCCTGGTCTCTGATAGTTTTCCAGGCAATGAAAGAACCAAATACTGTCTCACTTCCAAGAAGTTAATTCGAAAAGGTAACAATGAATTGCAATCCACTAATGGCACTCTGTCTGAATCTTGGAATACAAATTGCTGTGTTTGGATGGGCATGGAGAATACTTCTTCATTGCATTATGGTTTTACTATTAAGTATGATAAGAGAAAAAGACTATGGTCATGCATCTGGGTTGCAGGGTTGGCAATAGTAATTAGGATTCGAAGTATTTTCTGTATGCAGATTCCACTTGGAGTTGTCTTAGCTATTCCACCATTTAACTACCCTGTTAATCTGGCTGTTTCAAAGATTGCTCCAGCACTTATTGCTGGAAACTCCATTGTGCTTAAACCTCCAACTCAGGGTGCTGTTGCTGCACTGCATATGGTGCATTGCTTTCATTTGGTTGGCTTCCCCAAAGGTCTTATTAGCTGTGTGACAGGAAAGGGTTCTGAGATTGGTGACTTTCTTACAATGCATCCGGGGGTGAACTGCATAAGTTTCACGGGTGGGGACACTGGAATAGCAATCTCAAAGAAGGCTGGAATGATTCCTCTTCAAATGGAGCTGGGTGGAAAAGATGCTTGCATTGTTCTTGAGGATGCTGAATTGGATTTGGCAGCTGCTAACATTGTAAAAGGAGGCTTCTCCTACAGTGGTCAAAGGTGCACAGCTGTAAAGGTTGCTTTGGTCATGGAATCAATTGCTGACACACTTGTTAAGAAAATAAATGAAAAAGTTGCAAAATTAACTGTTGGGCCTCCGGAGGATGACAGTGATATCACACCAGTTGTCACAGAGTCCTCTGCTAACTTTATTGAAGGGTTGGTAATGGATGCTAAGAAGAAAGGAGCAACATTCTGCCAGGAATATAAAAGGGAGGGAAATCTCATATGGCCGCTGCTGTTGGATAATGTTCGTCCAGATATGAGAATAGCATGGGAGGAACCCTTTGGACCAGTTTTGCCAGTTATCAGAATAAATTCTGTTGAAGAAGGAATCCACCATTGTAATGCTAGCAATTTTGGCCTTCAGGGATGTATCTTTACAAGAGATATAAACAAAGCAATGCTGATAAGTGATGCAATGGAGACAGGAACAGTTCAAATTAATTCAGCACCAGCTCGTGGACCTGATCACTTTCCTTTTCAGGGTCTGAAGGATAGTGGAATTGGTTCTCAAGGAATCACCAACAGTATTAACATGATGACGAAGGTTAAGACCACAGTAATCAATTTACCAGCCCCTTCTTACACTATGGGCTGA 1710 0.4263 MAGRGTFAEIIDGEVFKFYADGQWNKSNSAKSVPIINPTTRKTHFKVQACTQEEVNRVIESAKTAQKSWAKTPLWKRAELLHKAAAILKEHKVPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKKLIRKGNNELQSTNGTLSESWNTNCCVWMGMENTSSLHYGFTIKYDKRKRLWSCIWVAGLAIVIRIRSIFCMQIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLVGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDAELDLAAANIVKGGFSYSGQRCTAVKVALVMESIADTLVKKINEKVAKLTVGPPEDDSDITPVVTESSANFIEGLVMDAKKKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCIFTRDINKAMLISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKVKTTVINLPAPSYTMG. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03229 569 PANTHER ALDEHYDE DEHYDROGENASE 226 568 - -
Seca8g03229 569 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 364 375 IPR016160 GO:0016491
Seca8g03229 569 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 336 343 IPR029510 GO:0016491
Seca8g03229 569 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 342 528 IPR016163 GO:0016620
Seca8g03229 569 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 228 556 IPR016162 GO:0016491
Seca8g03229 569 Pfam Aldehyde dehydrogenase family 24 135 IPR015590 GO:0016491
Seca8g03229 569 Pfam Aldehyde dehydrogenase family 225 556 IPR015590 GO:0016491
Seca8g03229 569 SUPERFAMILY ALDH-like 223 560 IPR016161 GO:0016491
Seca8g03229 569 SUPERFAMILY ALDH-like 15 139 IPR016161 GO:0016491
Seca8g03229 569 CDD ALDH_F11_NP-GAPDH 15 560 - -
Seca8g03229 569 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 340 530 - -
Seca8g03229 569 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 15 159 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03229 Seca-Chr8 92430320 92435769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03229 223 569 Aldehyde Dehydrogenase Gene Family AT2G24270 88.252 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03229 K00131 - gmx:100789108 659.448