Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03226 ATGGCAAACTGTCACCGGAATAACGTCGGAAATCTCGTTCTCGGCCACCACCACCACCACCCTACCAAGACGGCCACCTTCGCCAGCCATTTCCGTCTATGGAATTCCCTCTCCGCCGCCTCAATACGCCGCTTAATCTTCGACGCCGTCAGCTGCGGCGCCAGCTCTCGCTACCACCACCGTCGCCGCCATCACGACGATGATGACTTTCCGTCGACGGCGAGATCGGACTCCTCCTCCTCGTTCGACGAGAAACGGCAGCAACAACAAATACGACGAAACGACGAGCATAGTTTAAAGCCGAACAATGCGAGGTCGGAGAAGCTATCGGATCTTCTGAACATGGCGGAGTTGGAAGCGGACGTGGAGACGAAGAAGAAGGAGGAGGCGCTGGAGGAGCTGAAGCGGCTCGTGAAGGAGTTGCAGCAGGAAGAGGATTCGGTGAAGCGGCGAGAGGCTGCGGCCACCGTGAGGATGCTCGCGAAGGAGAACTTGGAAGTGAGAGGAACGCTCGCAATGCTTGGAGCCATTCCTCCTCTCGTTGCAATGCTCGATTTGGAAGACCTCGATTCTCAGATCGCTTCGCTCTATGCGTTGCTCAATCTCGGAATCGGAAACGATGCAAACAAAGCAGCAATTGTCAAAGTTGGCTCTGTTCACAAGATGATCAATCTCATTGAATCTCCAGATGGTCCAGATTCAGCGGTCTCTGAAGCAATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAACAAACCAATAATTGGGTCCTCTGCTGCAGTACCATTCTTAGTTAGAACCCTCAAGAGCTTAGATAATCAAAGTAGCCCCCAAGCTAAGCAAGATGCTCTCAGAGCACTGTACAATCTTTCAATCTTCCCAGCCAATAGTTCATTCATTTTGGAAACGGATTTGGTCCCATTTCTGATCAACTCAATAGGAGATATGGAAGTAACTGAAAGAACCCTCGCAATCCTTAGCAATTTGGTATCAACCCGAGAGGGTAGAAAAGCTATCAGTGCTGTGCCAGACGCGATTCCTATCCTGGTGGATGTATTGAATTGGACAGACTCACCAGAATGCCAGGAAAAAGCATCGTACATTTTGATGGTTATGGCACATAAATCCTACAGTGACAGGCAGGCCATGATTGAGGCAGGGATTGTGTCATCACTGCTAGAGTTGTCACTTATTGGTAGCACATTGGCTCAGAAAAGGGCCTCAAGGATGTTGGAAAGTTTGAGGGTAGACAAAGGGAAGCAGGTTTCTGGGAGCTATGGTGGAAATTTAGGCGCAACTGTCTCTGCCCCTATTTGTGGATCTTCATCATCTTATACAAAGCCAGATGGAGGAGAAAAAGAGTGTTTTGAGGAGGAGGAGGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCTATTAGTCCAGCAGAGTTTGCAAAACAACATGAGGAAGATTGTAAAGAGGGCCAACTTGCCTCAAGATATCGTTCCATCAGATCATTTCAAGTCACTCACTTCAAGTTCGACATCAAAGAGCCTGCCATTTTGA 1554 0.4884 MANCHRNNVGNLVLGHHHHHPTKTATFASHFRLWNSLSAASIRRLIFDAVSCGASSRYHHRRRHHDDDDFPSTARSDSSSSFDEKRQQQQIRRNDEHSLKPNNARSEKLSDLLNMAELEADVETKKKEEALEELKRLVKELQQEEDSVKRREAAATVRMLAKENLEVRGTLAMLGAIPPLVAMLDLEDLDSQIASLYALLNLGIGNDANKAAIVKVGSVHKMINLIESPDGPDSAVSEAIVANFLGLSALDSNKPIIGSSAAVPFLVRTLKSLDNQSSPQAKQDALRALYNLSIFPANSSFILETDLVPFLINSIGDMEVTERTLAILSNLVSTREGRKAISAVPDAIPILVDVLNWTDSPECQEKASYILMVMAHKSYSDRQAMIEAGIVSSLLELSLIGSTLAQKRASRMLESLRVDKGKQVSGSYGGNLGATVSAPICGSSSSYTKPDGGEKECFEEEEDMMSEEKKAVKLLVQQSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF. 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03226 517 SMART arm_5 337 376 IPR000225 GO:0005515
Seca8g03226 517 SMART arm_5 295 333 IPR000225 GO:0005515
Seca8g03226 517 SMART arm_5 164 204 IPR000225 GO:0005515
Seca8g03226 517 SMART arm_5 378 418 IPR000225 GO:0005515
Seca8g03226 517 SMART arm_5 206 249 IPR000225 GO:0005515
Seca8g03226 517 SMART arm_5 250 294 IPR000225 GO:0005515
Seca8g03226 517 MobiDBLite consensus disorder prediction 56 111 - -
Seca8g03226 517 Coils Coil 113 154 - -
Seca8g03226 517 Gene3D - 276 427 IPR011989 -
Seca8g03226 517 Gene3D - 106 275 IPR011989 -
Seca8g03226 517 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 26 517 - -
Seca8g03226 517 SUPERFAMILY ARM repeat 133 413 IPR016024 -
Seca8g03226 517 MobiDBLite consensus disorder prediction 61 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03226 Seca-Chr8 92295607 92297803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03226 16 417 U-box Gene Family AT2G23140 29.524 1.28e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03226 - - psat:127098188 687.952