Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03223 ATGGATGATCCCAGAGACCAGTTTCCTATAGGAATGCGTGTTCTTGCTGTGGATGATGACCCAACATGTCTCATGGTTTTGGAGACTCTGCTCAGAAGGTGTCAATACAATGTAACTTCAACTAAAAATGCAATATCGACACTGAAATTGTTGAGAGAAAACAAAAACAGGTTTGACTTGGTAATTAGTGATGTTCACATGCCAGACATGGATGGCTTTAAGCTGCTTGAGCTTGTGGGTCTTGAGATGGACCTACCTGTCATAATGTTGTCTGTAAACGATGACCCAAAGATGGTGATGAAGGGAATAACTCATGGAGCTTGTGATTATTTGCTAAAACCTGTTAGAATTGAGGAGTTACAGAATATTTGGCAGCACGTAATAAGGAGGAAGAAGATTGACCTGAAGGAGTTGAACAAAACCAGCAACCAAGACACACTTAATTCTGGTAACAGCAATGGACAAGGATCAGCACCAACAACAAATTCAGATCAAAATGAATTGCCATCCAAAAAAAGAAAGGATCATGATGAAGATGATGATGATGAGCATGAGAATGGTGACAATGATGACCATTCAACCCAGAAGAAGCCTAGAGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTTCTGCTGTTAGCCAATTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTAATGAATGTTGAAAAACTCACAAGGGAAAATGTGGCCAGTCATCTCCAGAAATATAGACTTTATCTGAAAAGAATCAGCTGTCAAACAAACCAACAAGCTAATATGGTGGCAGCCTTAGGTGGTGTAGACACATCCTATTTGAGAATGGGTTCTCTGAGTGGGATTGGACATTTGCAATCATTGAGTGGTTCTAGACAGTATCATAACAATACTTTCAGACCCTTTGCACCTGGTGGGATTATGAGTAGATTGAACACTCCTGCTAGTCTGAATCTTCATGAGTTGTCTTCTTATGGATCTCTTCAGTTGTGTCATGCACAAAATGTAAACAACAACACAAATGATCAGCTTAAGTTCCAATCAGCCATAGTTCATGGAAATCAGAATGGTGTTCAGGGAATGCCAATCTCTGTAGGGCTTGATCAGTTGCAACACAATAAGGGTGTTAGTCCTGTTCAAAACTTGACCACTCTTGTTGATGCTAAAACAACTTTTCCCATCACAAATAAACTTCTAGATCAGAAAACAAAAGTAACAATGGGTTGCTTACCTTCTGTTTTGAGTATCTCAAACAATGGCTTGGTGTTGGAAGCAAATCCACAAGACAAACAAGTTGGTGGAGTATATGAAAATTCAACTTCAGCAGCCTCTCAACATTCACAATTTTCTCTGCTGGATAATGGCAGGGGTAATCATATTTGGTCAAGTACTATACAAACATCTGGGACAAATTCTTATCTTCCAAGTGAACATTTTGGACAGCCCTCTATGCTTCTTACAGATAACATTACTTCTGGACCCTTGCAAGGGGGGAATTTGAGTGGTGTTTCATCTATCACTCCATTGTCCACTCAACCCCACGATACATTAACAGATATGCACCCCCAAGGTGTCAATTTTACAAATGTTCCTGGGCAAGTAAACAGTAATTTGACATTTCAAGGGTGGGATAACAATAATCAGGATGGTAGTTACCATTCTCAAGTTATTGGTAGCCCAACAGGCTCTCTGATTCCTGTGAATGGTGCAGCTGATCCAGAAAGCCATGCTTCAATCAACTCAACCTTCAACAGAAACCTGGACTTTGATTTTTGTGATCCCTTACAAATGAAGCATGATGGGATCATTGAATTAACTGAAGAGACCTCATTGAAACCAAATCAGGCACGTATAATGAACCTGCAGAGGTCTCAAAACAGTCGCATCTCTAATAATAATCTTGGCTCGTTGGAAGACTTGGTCAATACAATGATGAAACAGAAACAAGACAAGATGAAATTATTGGACGGATTCTTCCTATACGACAATAATTACTCTGGTGGGACATCTCTGTGA 2025 0.399 MDDPRDQFPIGMRVLAVDDDPTCLMVLETLLRRCQYNVTSTKNAISTLKLLRENKNRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNDDPKMVMKGITHGACDYLLKPVRIEELQNIWQHVIRRKKIDLKELNKTSNQDTLNSGNSNGQGSAPTTNSDQNELPSKKRKDHDEDDDDEHENGDNDDHSTQKKPRVVWSVELHRKFVSAVSQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCQTNQQANMVAALGGVDTSYLRMGSLSGIGHLQSLSGSRQYHNNTFRPFAPGGIMSRLNTPASLNLHELSSYGSLQLCHAQNVNNNTNDQLKFQSAIVHGNQNGVQGMPISVGLDQLQHNKGVSPVQNLTTLVDAKTTFPITNKLLDQKTKVTMGCLPSVLSISNNGLVLEANPQDKQVGGVYENSTSAASQHSQFSLLDNGRGNHIWSSTIQTSGTNSYLPSEHFGQPSMLLTDNITSGPLQGGNLSGVSSITPLSTQPHDTLTDMHPQGVNFTNVPGQVNSNLTFQGWDNNNQDGSYHSQVIGSPTGSLIPVNGAADPESHASINSTFNRNLDFDFCDPLQMKHDGIIELTEETSLKPNQARIMNLQRSQNSRISNNNLGSLEDLVNTMMKQKQDKMKLLDGFFLYDNNYSGGTSL. 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03223 674 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Seca8g03223 674 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Seca8g03223 674 Gene3D - 12 185 - -
Seca8g03223 674 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Seca8g03223 674 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Seca8g03223 674 Gene3D - 193 256 - -
Seca8g03223 674 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Seca8g03223 674 SUPERFAMILY CheY-like 11 133 IPR011006 -
Seca8g03223 674 CDD REC_typeB_ARR-like 14 128 - -
Seca8g03223 674 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 318 IPR045279 GO:0009736
Seca8g03223 674 SMART REC_2 12 124 IPR001789 GO:0000160
Seca8g03223 674 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Seca8g03223 674 MobiDBLite consensus disorder prediction 141 166 - -
Seca8g03223 674 MobiDBLite consensus disorder prediction 141 198 - -
Seca8g03223 674 PIRSF RR_ARR_type-B 1 672 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca8g03223 674 FunFam Two-component response regulator 193 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03223 Seca-Chr8 92162762 92168373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03223 6 431 Response Regulator Gene Family AT2G25180 51.501 1.87e-123 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca8g03223 Response_reg 1.3e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03223 - K14491 gmx:100777171 907.131