Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03220 ATGAACAAGGAGCCACCATACCTCTGTGATAGAGATAGAGATAGACCCTGCATCTTCTCTGCTCAAGAGGCACCTCCAAGTCCAAGTACCCCATTGCAGAATCCACAGGAAAAGAAGAAAGAGCAATCTGTTGAAGAGGAAGAAGAAGAAAAAGATACAAAGGTGGATACTTTATTGGATCTGAATGTCTCTAGCAATGATTTCAACCCAGAACTCAATCTCATCACTTGTTTAGATGTTGATTCATCATCTAATGCTAATTCATCAGAAAACCCTCTTGGTTCTTCTGATGCAGAGCCAAGGGTGTTCTCTTGCAACTATTGCCATAGAAAGTTCTACAGTTCACAAGCTTTAGGGGGACACCAAAATGCTCACAAGAGGGAGAGATCAATAGCAAAAAGAGGGCACAGATTTGGAACACAGATAATGGCATCAGCAGCAGCTTTTGGAGTCCCTCTTCTGCATAATCAAAGGTATTCAAGCATGGCTTCTTTGCCACTCTATGGTGGTTGTAGTAATAGACCTCTTGGAATTCAAGCACACTCCATGATTCAAAAGCCTTCTTCTCATATTTCCTCTAATGTGTTTGGAAGCTCTTTTGGTCACCATCATGGTTGGTCAAGACCCCTTATAGATCAACAACCTGGAATAGCAAAGCTAGCTGTGGCAGATTTTCATAGAACAACAGGAAGTGTTGGTAGGTTTGAAGTGGTAGATACTATGATGAATTCTGCATCTAATAAAGAAATTAGTGGTTATCATCAGCTGGTTAGTGGAGGAACTCTTTTGAAGAGTAATAATAATCAAGAAGAAATCAAGCACCTTGATTTGTCCCTCAAGCTCTGA 846 0.4078 MNKEPPYLCDRDRDRPCIFSAQEAPPSPSTPLQNPQEKKKEQSVEEEEEEKDTKVDTLLDLNVSSNDFNPELNLITCLDVDSSSNANSSENPLGSSDAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQIMASAAAFGVPLLHNQRYSSMASLPLYGGCSNRPLGIQAHSMIQKPSSHISSNVFGSSFGHHHGWSRPLIDQQPGIAKLAVADFHRTTGSVGRFEVVDTMMNSASNKEISGYHQLVSGGTLLKSNNNQEEIKHLDLSLKL. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03220 281 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 281 IPR044246 GO:0009788
Seca8g03220 281 SUPERFAMILY beta-beta-alpha zinc fingers 100 130 IPR036236 -
Seca8g03220 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Seca8g03220 281 MobiDBLite consensus disorder prediction 23 37 - -
Seca8g03220 281 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Seca8g03220 281 MobiDBLite consensus disorder prediction 1 18 - -
Seca8g03220 281 MobiDBLite consensus disorder prediction 1 55 - -
Seca8g03220 281 Gene3D Classic Zinc Finger 86 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03220 Seca-Chr8 92094053 92094919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03220 11 281 C2H2 Transcription Factor Family AT5G10970 39.384 1.05e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g03220 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03220 - - lja:Lj5g3v0526470.1 346.665