Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03201 ATGGCCAGACCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCTGAGATTCGCCACCCCATTTTGAAGACTAGGATATGGCTTGGTACTTTTGAAACAGCTGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGCTTATGTGTGGTGCCAGGGCAAGAACAAATTTCCCTTTTAACCCAAATATGTCTCAATCTTCATCTTCTTCTTCTTCTAAGCTTCTCTCAGCAACTTTGACTGCTAAATTGCATAGATGCTATATGGCTTCTTTGCAAATGACTAGGCAATCTTTACCACCAGAGCCTCAAAGGGTGCCTCCAGCATCCAATTTCAATGATACGGTTTTGTCACAACAAAAGAGACAACAGGTGAATGATGAGAAAGAAGAAGAAGCAGAGACCACCAGAGTTGGTGTGGAAATTAGTGCTAGTGCTACTCAACAACTACAGTTCAAGCCTCTTGAAGAAGATCATATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGGTCTATTGAACTCTGTTCTGTCTGA 552 0.4348 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNMSQSSSSSSSKLLSATLTAKLHRCYMASLQMTRQSLPPEPQRVPPASNFNDTVLSQQKRQQVNDEKEEEAETTRVGVEISASATQQLQFKPLEEDHIEQMIEELLDYGSIELCSV. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03201 183 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Seca8g03201 183 MobiDBLite consensus disorder prediction 128 142 - -
Seca8g03201 183 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Seca8g03201 183 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Seca8g03201 183 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Seca8g03201 183 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Seca8g03201 183 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Seca8g03201 183 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Seca8g03201 183 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Seca8g03201 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 136 - -
Seca8g03201 183 MobiDBLite consensus disorder prediction 113 127 - -
Seca8g03201 183 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Seca8g03201 183 MobiDBLite consensus disorder prediction 102 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03201 Seca-Chr8 91281794 91283553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03201 1 183 AP2-EREBP Transcription Factor Family AT5G25190 66.848 3.88e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g03201 AP2 5.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03201 - - gmx:100785918 243.817